diff rpextractsink.xml @ 2:caf2b5731a5e draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 2333b7b56422febf439cd9f4cd3e6eda858b2690

--- a/rpextractsink.xml	Wed Nov 16 14:57:12 2022 +0000
+++ b/rpextractsink.xml	Tue Mar 28 12:11:14 2023 +0000
@@ -1,12 +1,9 @@
 <tool id="rptools_rpextractsink" name="Sink from SBML" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="21.09">
     <description>Generate the RetroPath2.0 sink file from an SBML input</description>
     <macros>
-        <token name="@VERSION_SUFFIX@">0</token>
-        <token name="@TOOL_VERSION@">5.13.1</token>
+        <import>macros.xml</import>
     </macros>
-    <requirements>
-        <requirement type="package" version="@TOOL_VERSION@">rptools</requirement>
-    </requirements>
+    <expand macro="requirements"/>
     <stdio>
         <regex match="Could not retreive any species in the compartment" level="fatal" />
     </stdio>
@@ -34,11 +31,10 @@
         <test>
         <!-- test 1: check if identical outputs are produced with iCN718 model input  -->
             <param name="input" value="iCN718.xml.gz" />
-            <output name="sink" file="sink.csv" ftype="csv" compare="diff"/>
+            <output name="sink" md5="0a7438b90704bf1ba88e123e6bb54df2" />
         </test>
     </tests>
     <help><![CDATA[
-
 Sink from SBML
 =================
 
@@ -64,31 +60,13 @@
 ------
 
 * **Sink**\ : CSV file containing a collection of chemical species used by the restrosynthesis algorithm of `RetroPath2.0 <https://doi.org/10.1016/j.ymben.2017.12.002>`_.
-
-Project Links
----------------------
-
-* `GitHub <https://github.com/brsynth/rptools>`_
-
-License
--------
-
-`MIT <https://github.com/brsynth/rptools/blob/master/LICENSE>`_
-
-Acknowledgments
----------------
-
-* Thomas Duigou
-
     ]]></help>
-    <creator>
-        <person givenName="Joan" familyName="Hérisson" email="[e-mail]" identifier="https://orcid.org/0000-0001-9741-0847" />
-        <person givenName="Melchior" familyName="du Lac" identifier="https://orcid.org/0000-0002-9984-4689" />
-    </creator>
+    <expand macro="creator"/>
     <citations>
         <citation type="doi">10.1038/nbt1156</citation>
         <citation type="doi">10.1016/j.ymben.2017.12.002</citation>
         <citation type="doi">10.1186/1752-0509-7-74</citation>
         <citation type="doi">10.1093/bioinformatics/btn051</citation>
+        <citation type="doi">10.1038/s41467-022-32661-x</citation>
     </citations>
 </tool>