Mercurial > repos > tduigou > rptools_rpfba
comparison rpfba.xml @ 2:082cd90e7254 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 2333b7b56422febf439cd9f4cd3e6eda858b2690
author | tduigou |
---|---|
date | Tue, 28 Mar 2023 12:10:05 +0000 |
parents | 5d35eea4f75d |
children | b62127088cfe |
comparison
equal
deleted
inserted
replaced
1:5d35eea4f75d | 2:082cd90e7254 |
---|---|
1 <tool id="rptools_rpfba" name="Flux balance analysis" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="21.09"> | 1 <tool id="rptools_rpfba" name="Flux balance analysis" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="21.09"> |
2 <description>for the RetroPath2.0 heterologous pathways</description> | 2 <description>for the RetroPath2.0 heterologous pathways</description> |
3 <macros> | 3 <macros> |
4 <token name="@VERSION_SUFFIX@">0</token> | 4 <import>macros.xml</import> |
5 <token name="@TOOL_VERSION@">5.13.1</token> | |
6 </macros> | 5 </macros> |
7 <requirements> | 6 <expand macro="requirements"/> |
8 <requirement type="package" version="@TOOL_VERSION@">rptools</requirement> | |
9 </requirements> | |
10 <stdio> | 7 <stdio> |
11 <regex match="WARNING" level="warning" /> | 8 <regex match="WARNING" level="warning" /> |
12 <regex match="ERROR" level="fatal" /> | 9 <regex match="ERROR" level="fatal" /> |
13 </stdio> | 10 </stdio> |
14 <command detect_errors="exit_code"><![CDATA[ | 11 <command detect_errors="exit_code"><![CDATA[ |
164 | 161 |
165 Advanced options: | 162 Advanced options: |
166 | 163 |
167 * **Output the merged model?**\ : (boolean, default=False) output the full merged model instead of heterologous pathway only | 164 * **Output the merged model?**\ : (boolean, default=False) output the full merged model instead of heterologous pathway only |
168 * **Ignore Orphan Species?**\ : (boolean, default=True) ignore metabolites that are only consumed or produced | 165 * **Ignore Orphan Species?**\ : (boolean, default=True) ignore metabolites that are only consumed or produced |
169 | |
170 | |
171 Project Links | |
172 --------------------- | |
173 | |
174 * `GitHub <https://github.com/brsynth/rptools/tree/master/rptools/rpfba>`_ | |
175 | |
176 License | |
177 ------- | |
178 | |
179 * `MIT <https://github.com/brsynth/rptools/blob/master/LICENSE>`_ | |
180 | |
181 Acknowledgments | |
182 --------------- | |
183 | |
184 * Thomas Duigou | |
185 ]]></help> | 166 ]]></help> |
186 <creator> | 167 <expand macro="creator"/> |
187 <person givenName="Joan" familyName="Hérisson" email="joan.herisson@univ-evry.fr" identifier="https://orcid.org/0000-0001-9741-0847" /> | |
188 <person givenName="Melchior" familyName="du Lac" identifier="https://orcid.org/0000-0002-9984-4689" /> | |
189 </creator> | |
190 <citations> | 168 <citations> |
191 <citation type="doi">10.1186/1752-0509-7-74</citation> | 169 <citation type="doi">10.1186/1752-0509-7-74</citation> |
192 <citation type="doi">10.1515/jib-2016-290 </citation> | 170 <citation type="doi">10.1515/jib-2016-290</citation> |
171 <citation type="doi">10.1038/s41467-022-32661-x</citation> | |
193 </citations> | 172 </citations> |
194 </tool> | 173 </tool> |