Mercurial > repos > tduigou > rptools_rpfba

comparison test-data/rp_001_0001_rpfba_in.xml @ 1:5d35eea4f75d draft

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planemo upload commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
author tduigou
date Wed, 16 Nov 2022 14:58:22 +0000
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0:21349603013a 1:5d35eea4f75d
1 <?xml version="1.0" encoding="UTF-8"?>
2 <sbml xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:groups="http://www.sbml.org/sbml/level3/version1/groups/version1" xmlns:fbc="http://www.sbml.org/sbml/level3/version1/fbc/version2" level="3" version="1" groups:required="false" fbc:required="false">
3 <model metaid="a03e1bf0f20b54a66f7b4ce262ea6b0f7579c0a1e47144a649b9e2e711f6b3ed" id="RP_model_001_0001" name="001_0001" substanceUnits="mole" timeUnits="second" extentUnits="mole" fbc:strict="true">
4 <listOfCompartments>
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14 <rdf:li rdf:resource="http://identifiers.org/seed/c"/>
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234 <brsynth:MNXR118024/>
235 <brsynth:MNXR139549/>
236 </brsynth:tmpl_rxn_ids>
237 <brsynth:rule_score value="0.5683242688496836"/>
238 <brsynth:idx_in_path value="2"/>
239 </brsynth:brsynth>
240 </rdf:BRSynth>
241 </rdf:RDF>
242 </annotation>
243 <listOfReactants>
244 <speciesReference species="CMPD_0000000003" stoichiometry="1" constant="true"/>
245 </listOfReactants>
246 <listOfProducts>
247 <speciesReference species="CMPD_0000000001" stoichiometry="1" constant="true"/>
248 <speciesReference species="MNXM11" stoichiometry="2" constant="true"/>
249 </listOfProducts>
250 </reaction>
251 <reaction metaid="_7af1776cbbaecbf874d7f576d21891f6ad79e3b7c2e726cfd2ee9f5bd6f483c4" sboTerm="SBO:0000176" id="rxn_1" reversible="false" fast="false" fbc:lowerFluxBound="BRS_FBC_0" fbc:upperFluxBound="BRS_FBC_999999">
252 <annotation>
253 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
254 <rdf:Description rdf:about="#_7af1776cbbaecbf874d7f576d21891f6ad79e3b7c2e726cfd2ee9f5bd6f483c4">
255 <bqbiol:is>
256 <rdf:Bag>
257 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.29"/>
258 </rdf:Bag>
259 </bqbiol:is>
260 </rdf:Description>
261 <rdf:BRSynth rdf:about="#_7af1776cbbaecbf874d7f576d21891f6ad79e3b7c2e726cfd2ee9f5bd6f483c4">
262 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
263 <brsynth:smiles value="[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H].[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])([H])C(=C([H])[H])C([H])([H])[H]&gt;&gt;[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H].O=P(O)(O)OP(=O)(O)O.O=P(O)(O)OP(=O)(O)O.O=P(O)(O)OP(=O)(O)O"/>
264 <brsynth:rp2_transfo_id value="TRS_0_2_363"/>
265 <brsynth:rule_ids>
266 <brsynth:RR-02-90bcfd187709eb1b-16-F/>
267 </brsynth:rule_ids>
268 <brsynth:tmpl_rxn_ids>
269 <brsynth:MNXR132232/>
270 </brsynth:tmpl_rxn_ids>
271 <brsynth:rule_score value="0.5869134225065102"/>
272 <brsynth:idx_in_path value="1"/>
273 </brsynth:brsynth>
274 </rdf:BRSynth>
275 </rdf:RDF>
276 </annotation>
277 <listOfReactants>
278 <speciesReference species="MNXM132" stoichiometry="1" constant="true"/>
279 <speciesReference species="MNXM83" stoichiometry="1" constant="true"/>
280 </listOfReactants>
281 <listOfProducts>
282 <speciesReference species="CMPD_0000000003" stoichiometry="1" constant="true"/>
283 <speciesReference species="MNXM11" stoichiometry="3" constant="true"/>
284 </listOfProducts>
285 </reaction>
286 </listOfReactions>
287 <groups:listOfGroups>
288 <groups:group metaid="_93eef40c447d295fa61df9270c5fd909ec2ba7ee9883090552c0466873cd4299" groups:id="rp_pathway" groups:kind="collection">
289 <annotation>
290 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
291 <rdf:BRSynth rdf:about="#_93eef40c447d295fa61df9270c5fd909ec2ba7ee9883090552c0466873cd4299">
292 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
293 <brsynth:global_score value="-1"/>
294 </brsynth:brsynth>
295 </rdf:BRSynth>
296 </rdf:RDF>
297 </annotation>
298 <groups:listOfMembers>
299 <groups:member groups:idRef="rxn_1"/>
300 <groups:member groups:idRef="rxn_2"/>
301 <groups:member groups:idRef="rxn_3"/>
302 </groups:listOfMembers>
303 </groups:group>
304 <groups:group metaid="_613b064337553014ede418c67180137a4561ff11b13f3bfa1a2765ef37ac375a" groups:id="rp_intermediate_species" groups:kind="collection">
305 <annotation>
306 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
307 <rdf:BRSynth rdf:about="#_613b064337553014ede418c67180137a4561ff11b13f3bfa1a2765ef37ac375a">
308 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/>
309 </rdf:BRSynth>
310 </rdf:RDF>
311 </annotation>
312 <groups:listOfMembers>
313 <groups:member groups:idRef="CMPD_0000000003"/>
314 <groups:member groups:idRef="CMPD_0000000001"/>
315 </groups:listOfMembers>
316 </groups:group>
317 <groups:group metaid="_564fce39b23c6cf87d12dc2c612448384fd2cd980fe3fc07829e2ef802645579" groups:id="rp_trunk_species" groups:kind="collection">
318 <annotation>
319 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
320 <rdf:BRSynth rdf:about="#_564fce39b23c6cf87d12dc2c612448384fd2cd980fe3fc07829e2ef802645579">
321 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/>
322 </rdf:BRSynth>
323 </rdf:RDF>
324 </annotation>
325 <groups:listOfMembers>
326 <groups:member groups:idRef="TARGET_0000000001"/>
327 <groups:member groups:idRef="MNXM83"/>
328 <groups:member groups:idRef="CMPD_0000000001"/>
329 <groups:member groups:idRef="MNXM132"/>
330 <groups:member groups:idRef="CMPD_0000000003"/>
331 </groups:listOfMembers>
332 </groups:group>
333 <groups:group metaid="_9e3154173c97366b3980dd1642e1e35d0bdfc3274abc744e89ecb518bcd48378" groups:id="rp_completed_species" groups:kind="collection">
334 <annotation>
335 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
336 <rdf:BRSynth rdf:about="#_9e3154173c97366b3980dd1642e1e35d0bdfc3274abc744e89ecb518bcd48378">
337 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/>
338 </rdf:BRSynth>
339 </rdf:RDF>
340 </annotation>
341 <groups:listOfMembers>
342 <groups:member groups:idRef="MNXM8975"/>
343 <groups:member groups:idRef="MNXM24"/>
344 <groups:member groups:idRef="MNXM11"/>
345 </groups:listOfMembers>
346 </groups:group>
347 <groups:group metaid="_58b3b59284e0d918d6d3f3bcadc2d757726da7594cd899cad4e745836ac967a3" groups:id="rp_sink_species" groups:kind="collection">
348 <annotation>
349 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
350 <rdf:BRSynth rdf:about="#_58b3b59284e0d918d6d3f3bcadc2d757726da7594cd899cad4e745836ac967a3">
351 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/>
352 </rdf:BRSynth>
353 </rdf:RDF>
354 </annotation>
355 <groups:listOfMembers>
356 <groups:member groups:idRef="MNXM83"/>
357 <groups:member groups:idRef="MNXM132"/>
358 <groups:member groups:idRef="MNXM11"/>
359 </groups:listOfMembers>
360 </groups:group>
361 </groups:listOfGroups>
362 </model>
363 </sbml>