Mercurial > repos > tduigou > rptools_rpfba
diff rpfba.xml @ 2:082cd90e7254 draft
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 2333b7b56422febf439cd9f4cd3e6eda858b2690
author | tduigou |
---|---|
date | Tue, 28 Mar 2023 12:10:05 +0000 |
parents | 5d35eea4f75d |
children | b62127088cfe |
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--- a/rpfba.xml Wed Nov 16 14:58:22 2022 +0000 +++ b/rpfba.xml Tue Mar 28 12:10:05 2023 +0000 @@ -1,12 +1,9 @@ <tool id="rptools_rpfba" name="Flux balance analysis" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="21.09"> <description>for the RetroPath2.0 heterologous pathways</description> <macros> - <token name="@VERSION_SUFFIX@">0</token> - <token name="@TOOL_VERSION@">5.13.1</token> + <import>macros.xml</import> </macros> - <requirements> - <requirement type="package" version="@TOOL_VERSION@">rptools</requirement> - </requirements> + <expand macro="requirements"/> <stdio> <regex match="WARNING" level="warning" /> <regex match="ERROR" level="fatal" /> @@ -166,29 +163,11 @@ * **Output the merged model?**\ : (boolean, default=False) output the full merged model instead of heterologous pathway only * **Ignore Orphan Species?**\ : (boolean, default=True) ignore metabolites that are only consumed or produced - - -Project Links ---------------------- - -* `GitHub <https://github.com/brsynth/rptools/tree/master/rptools/rpfba>`_ - -License -------- - -* `MIT <https://github.com/brsynth/rptools/blob/master/LICENSE>`_ - -Acknowledgments ---------------- - -* Thomas Duigou ]]></help> - <creator> - <person givenName="Joan" familyName="Hérisson" email="joan.herisson@univ-evry.fr" identifier="https://orcid.org/0000-0001-9741-0847" /> - <person givenName="Melchior" familyName="du Lac" identifier="https://orcid.org/0000-0002-9984-4689" /> - </creator> + <expand macro="creator"/> <citations> <citation type="doi">10.1186/1752-0509-7-74</citation> - <citation type="doi">10.1515/jib-2016-290 </citation> + <citation type="doi">10.1515/jib-2016-290</citation> + <citation type="doi">10.1038/s41467-022-32661-x</citation> </citations> </tool>