Mercurial > repos > tduigou > rptools_rpfba

diff rpfba.xml @ 2:082cd90e7254 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 2333b7b56422febf439cd9f4cd3e6eda858b2690
author tduigou
date Tue, 28 Mar 2023 12:10:05 +0000
parents 5d35eea4f75d
children b62127088cfe
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line diff
--- a/rpfba.xml	Wed Nov 16 14:58:22 2022 +0000
+++ b/rpfba.xml	Tue Mar 28 12:10:05 2023 +0000
@@ -1,12 +1,9 @@
 <tool id="rptools_rpfba" name="Flux balance analysis" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="21.09">
     <description>for the RetroPath2.0 heterologous pathways</description>
     <macros>
-        <token name="@VERSION_SUFFIX@">0</token>
-        <token name="@TOOL_VERSION@">5.13.1</token>
+        <import>macros.xml</import>
     </macros>
-    <requirements>
-        <requirement type="package" version="@TOOL_VERSION@">rptools</requirement>
-    </requirements>
+    <expand macro="requirements"/>
     <stdio>
         <regex match="WARNING" level="warning" />
         <regex match="ERROR" level="fatal" />
@@ -166,29 +163,11 @@
 
 * **Output the merged model?**\ : (boolean, default=False) output the full merged model instead of heterologous pathway only
 * **Ignore Orphan Species?**\ : (boolean, default=True) ignore metabolites that are only consumed or produced
-
-
-Project Links
----------------------
-
-* `GitHub <https://github.com/brsynth/rptools/tree/master/rptools/rpfba>`_
-
-License
--------
-
-* `MIT <https://github.com/brsynth/rptools/blob/master/LICENSE>`_
-
-Acknowledgments
----------------
-
-* Thomas Duigou
     ]]></help>
-    <creator>
-        <person givenName="Joan" familyName="Hérisson" email="joan.herisson@univ-evry.fr" identifier="https://orcid.org/0000-0001-9741-0847" />
-        <person givenName="Melchior" familyName="du Lac" identifier="https://orcid.org/0000-0002-9984-4689" />
-    </creator>
+    <expand macro="creator"/>
     <citations>
         <citation type="doi">10.1186/1752-0509-7-74</citation>
-        <citation type="doi">10.1515/jib-2016-290 </citation>    
+        <citation type="doi">10.1515/jib-2016-290</citation>
+        <citation type="doi">10.1038/s41467-022-32661-x</citation>
     </citations>
 </tool>