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view test-data/rp_001_0006.xml @ 0:21349603013a draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
author tduigou
date Wed, 16 Nov 2022 11:13:10 +0000
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<?xml version="1.0" encoding="UTF-8"?>
<sbml xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:groups="http://www.sbml.org/sbml/level3/version1/groups/version1" xmlns:fbc="http://www.sbml.org/sbml/level3/version1/fbc/version2" level="3" version="1" groups:required="false" fbc:required="false">
  <model metaid="_9abfd4c46acaab90583da6a3a85bb5000b25ca6dcac80825140a206a3c167d09" id="RP_model_001_0006" name="001_0006" substanceUnits="mole" timeUnits="second" extentUnits="mole" fbc:strict="true">
    <listOfCompartments>
      <compartment metaid="_2e7d2c03a9507ae265ecf5b5356885a53393a2029d241394997265a1a25aefc6" sboTerm="SBO:0000290" id="c" name="cytosol" size="1" constant="true">
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              <bqbiol:is>
                <rdf:Bag>
                  <rdf:li rdf:resource="http://identifiers.org/bigg.compartment/c"/>
                  <rdf:li rdf:resource="http://identifiers.org/bigg.compartment/c_c"/>
                  <rdf:li rdf:resource="http://identifiers.org/metanetx.compartment/MNXC3"/>
                  <rdf:li rdf:resource="http://identifiers.org/seed/c"/>
                  <rdf:li rdf:resource="http://identifiers.org/seed/c0"/>
                  <rdf:li rdf:resource="http://identifiers.org/seed/cytosol"/>
                  <rdf:li rdf:resource="http://identifiers.org/name/cytosol"/>
                </rdf:Bag>
              </bqbiol:is>
            </rdf:Description>
          </rdf:RDF>
        </annotation>
      </compartment>
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                  <brsynth:value value="-1.0"/>
                </brsynth:fba_fraction_shadow_price>
                <brsynth:thermo_standard_dg_formation>
                  <brsynth:value value="1245.5794452419402"/>
                  <brsynth:units value="kilojoule / mole"/>
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              </brsynth:brsynth>
            </rdf:BRSynth>
          </rdf:RDF>
        </annotation>
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                <brsynth:thermo_standard_dg_formation>
                  <brsynth:value value="-1833.2298341488033"/>
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        <annotation>
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                  <brsynth:value value="None"/>
                </brsynth:fba_biomass_shadow_price>
                <brsynth:fba_fraction_shadow_price>
                  <brsynth:value value="None"/>
                </brsynth:fba_fraction_shadow_price>
                <brsynth:thermo_standard_dg_formation>
                  <brsynth:value value="-2236.551670011945"/>
                  <brsynth:units value="kilojoule / mole"/>
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            </rdf:BRSynth>
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        </annotation>
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        <annotation>
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                <brsynth:thermo_standard_dg_formation>
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                  <brsynth:units value="kilojoule / mole"/>
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              </brsynth:brsynth>
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          </rdf:RDF>
        </annotation>
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                <brsynth:smiles/>
                <brsynth:inchi/>
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                <brsynth:fba_biomass_shadow_price>
                  <brsynth:value value="None"/>
                </brsynth:fba_biomass_shadow_price>
                <brsynth:fba_fraction_shadow_price>
                  <brsynth:value value="None"/>
                </brsynth:fba_fraction_shadow_price>
                <brsynth:thermo_standard_dg_formation>
                  <brsynth:value value="-2261.3806478863044"/>
                  <brsynth:units value="kilojoule / mole"/>
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          </rdf:RDF>
        </annotation>
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                  <brsynth:units value="kilojoule / mole"/>
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          </rdf:RDF>
        </annotation>
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                <brsynth:inchikey value="XPPKVPWEQAFLFU-UHFFFAOYSA-N"/>
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                  <brsynth:value value="None"/>
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                  <brsynth:value value="None"/>
                </brsynth:fba_fraction_shadow_price>
                <brsynth:thermo_standard_dg_formation>
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                  <brsynth:units value="kilojoule / mole"/>
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            </rdf:BRSynth>
          </rdf:RDF>
        </annotation>
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            </rdf:BRSynth>
          </rdf:RDF>
        </annotation>
      </species>
    </listOfSpecies>
    <listOfParameters>
      <parameter metaid="dc937b59892604f5a86ac96936cd7ff09e25f18ae6b758e8014a24c7fa039e91" sboTerm="SBO:0000625" id="BRS_FBC_10000_0" value="10000" constant="true"/>
      <parameter metaid="dc937b59892604f5a86ac96936cd7ff09e25f18ae6b758e8014a24c7fa039e91" sboTerm="SBO:0000625" id="BRS_FBC_0_0" value="0" constant="true"/>
    </listOfParameters>
    <listOfReactions>
      <reaction metaid="_7af1776cbbaecbf874d7f576d21891f6ad79e3b7c2e726cfd2ee9f5bd6f483c4" sboTerm="SBO:0000176" id="rxn_1" reversible="false" fast="false" fbc:lowerFluxBound="BRS_FBC_0_0" fbc:upperFluxBound="BRS_FBC_10000_0">
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                <brsynth:rp2_transfo_id value="TRS_0_2_739"/>
                <brsynth:rule_ids>
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                <brsynth:tmpl_rxn_ids>
                  <brsynth:MNXR132232/>
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                <brsynth:rule_score value="0.5706379442030705"/>
                <brsynth:idx_in_path value="1"/>
                <brsynth:selenzy/>
                <brsynth:fba_biomass>
                  <brsynth:value value="0.0"/>
                  <brsynth:units value="gDW / gDW / hour"/>
                </brsynth:fba_biomass>
                <brsynth:fba_fraction>
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                <brsynth:thermo_dGm_prime>
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                <brsynth:thermo_dG_prime>
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                <brsynth:thermo_dG>
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            </rdf:BRSynth>
          </rdf:RDF>
        </annotation>
        <listOfReactants>
          <speciesReference species="MNXM132" stoichiometry="1" constant="true"/>
          <speciesReference species="MNXM83" stoichiometry="1" constant="true"/>
        </listOfReactants>
        <listOfProducts>
          <speciesReference species="CMPD_0000000003" stoichiometry="1" constant="true"/>
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                <brsynth:thermo_dGm_prime>
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                <brsynth:thermo_dG_prime>
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                <brsynth:thermo_dG>
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            </rdf:BRSynth>
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        </annotation>
        <listOfReactants>
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        </listOfReactants>
        <listOfProducts>
          <speciesReference species="CMPD_0000000001" stoichiometry="1" constant="true"/>
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    </groups:listOfGroups>
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</sbml>