Mercurial > repos > tduigou > rptools_rpfba
changeset 5:beabdc945670 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 162ee89a8e36033f32973d72dfc1b11ca27da61f
| author | tduigou |
|---|---|
| date | Fri, 01 Dec 2023 14:29:59 +0000 |
| parents | f297590100c8 |
| children | |
| files | macros.xml rpfba.xml |
| diffstat | 2 files changed, 5 insertions(+), 5 deletions(-) [+] |
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--- a/macros.xml Thu Nov 23 14:26:35 2023 +0000 +++ b/macros.xml Fri Dec 01 14:29:59 2023 +0000 @@ -1,5 +1,5 @@ <macros> - <token name="@TOOL_VERSION@">6.4.1</token> + <token name="@TOOL_VERSION@">6.5.0</token> <token name="@VERSION_SUFFIX@">0</token> <xml name="requirements"> <requirements>
--- a/rpfba.xml Thu Nov 23 14:26:35 2023 +0000 +++ b/rpfba.xml Fri Dec 01 14:29:59 2023 +0000 @@ -15,8 +15,8 @@ #end if --objective_rxn_id '$objective_rxn_id' --sim '$input_sim_type.sim_type' - #if str($adv.ignore_orphan_species) == "true": - --ignore_orphan_species + #if str($adv.with_orphan_species) == "true": + --with_orphan_species #end if --log "error" #if str($input_sim_type.sim_type)=="fba" @@ -55,7 +55,7 @@ </conditional> <section name="adv" title="Advanced Options" expanded="false"> <param name="merge" type="boolean" label="Output the merged model?" checked="false" display="checkboxes" /> - <param name="ignore_orphan_species" type="boolean" label="Ignore metabolites that are only consumed or produced?" checked="true" /> + <param name="with_orphan_species" type="boolean" label="Add metabolites that are only consumed or produced?" checked="false" /> </section> </inputs> <outputs> @@ -165,7 +165,7 @@ Advanced options: * **Output the merged model?**\ : (boolean, default=False) output the full merged model instead of heterologous pathway only -* **Ignore Orphan Species?**\ : (boolean, default=True) ignore metabolites that are only consumed or produced +* **With Orphan Species?**\ : (boolean, default=False) add metabolites that are only consumed or produced ]]></help> <expand macro="creator"/> <citations>