comparison test-data/rp_001_0011.xml @ 0:a1764894d6ca draft

planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
author tduigou
date Wed, 16 Nov 2022 11:11:58 +0000
parents
children
comparison
equal deleted inserted replaced
-1:000000000000 0:a1764894d6ca
1 <?xml version="1.0" encoding="UTF-8"?>
2 <sbml xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:groups="http://www.sbml.org/sbml/level3/version1/groups/version1" xmlns:fbc="http://www.sbml.org/sbml/level3/version1/fbc/version2" level="3" version="1" groups:required="false" fbc:required="false">
3 <model metaid="_2eda565339ba8b09cce4d7e7775c0cdc48d2829ace3c6b73d4eb3136afc453a4" id="RP_model_001_0011" name="001_0011" substanceUnits="mole" timeUnits="second" extentUnits="mole" fbc:strict="true">
4 <listOfCompartments>
5 <compartment metaid="_2e7d2c03a9507ae265ecf5b5356885a53393a2029d241394997265a1a25aefc6" sboTerm="SBO:0000290" id="c" name="cytosol" size="1" constant="true">
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9 <bqbiol:is>
10 <rdf:Bag>
11 <rdf:li rdf:resource="http://identifiers.org/bigg.compartment/c"/>
12 <rdf:li rdf:resource="http://identifiers.org/bigg.compartment/c_c"/>
13 <rdf:li rdf:resource="http://identifiers.org/metanetx.compartment/MNXC3"/>
14 <rdf:li rdf:resource="http://identifiers.org/seed/c"/>
15 <rdf:li rdf:resource="http://identifiers.org/seed/c0"/>
16 <rdf:li rdf:resource="http://identifiers.org/seed/cytosol"/>
17 <rdf:li rdf:resource="http://identifiers.org/name/cytosol"/>
18 </rdf:Bag>
19 </bqbiol:is>
20 </rdf:Description>
21 </rdf:RDF>
22 </annotation>
23 </compartment>
24 </listOfCompartments>
25 <listOfSpecies>
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250 </listOfSpecies>
251 <listOfParameters>
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269 <brsynth:rp2_transfo_id value="TRS_0_2_739"/>
270 <brsynth:rule_ids>
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273 <brsynth:tmpl_rxn_ids>
274 <brsynth:MNXR132232/>
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278 <brsynth:selenzy/>
279 <brsynth:fba_biomass>
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283 <brsynth:fba_fraction>
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285 <brsynth:units value="milimole / gDW / hour"/>
286 </brsynth:fba_fraction>
287 <brsynth:thermo_dG0_prime>
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289 <brsynth:error value="7.250256007547839"/>
290 <brsynth:units value="kilojoule / mole"/>
291 </brsynth:thermo_dG0_prime>
292 <brsynth:thermo_dGm_prime>
293 <brsynth:value value="-3050.151185208441"/>
294 <brsynth:error value="7.250256007547839"/>
295 <brsynth:units value="kilojoule / mole"/>
296 </brsynth:thermo_dGm_prime>
297 <brsynth:thermo_dG_prime>
298 <brsynth:value value="-3015.9215101389987"/>
299 <brsynth:error value="7.250256007547839"/>
300 <brsynth:units value="kilojoule / mole"/>
301 </brsynth:thermo_dG_prime>
302 <brsynth:thermo_dG>
303 <brsynth:value value="-3734.681829188674"/>
304 <brsynth:error value="7.250256007547839"/>
305 <brsynth:units value="kilojoule / mole"/>
306 </brsynth:thermo_dG>
307 </brsynth:brsynth>
308 </rdf:BRSynth>
309 </rdf:RDF>
310 </annotation>
311 <listOfReactants>
312 <speciesReference species="MNXM132" stoichiometry="1" constant="true"/>
313 <speciesReference species="MNXM83" stoichiometry="1" constant="true"/>
314 </listOfReactants>
315 <listOfProducts>
316 <speciesReference species="CMPD_0000000003" stoichiometry="1" constant="true"/>
317 <speciesReference species="MNXM11" stoichiometry="3" constant="true"/>
318 </listOfProducts>
319 </reaction>
320 <reaction metaid="c9c2d56fd0ad9d5b8cd80acad4b5df22945ab4de50db7b24db52a91a7560c3ff" sboTerm="SBO:0000176" id="rxn_2" reversible="false" fast="false" fbc:lowerFluxBound="BRS_FBC_0_0" fbc:upperFluxBound="BRS_FBC_10000_0">
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327 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.99"/>
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341 <brsynth:MNXR111499/>
342 <brsynth:MNXR113543/>
343 <brsynth:MNXR118024/>
344 <brsynth:MNXR139549/>
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348 <brsynth:selenzy/>
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353 <brsynth:fba_fraction>
354 <brsynth:value value="0.9388532834589367"/>
355 <brsynth:units value="milimole / gDW / hour"/>
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357 <brsynth:thermo_dG0_prime>
358 <brsynth:value value="-119.13360567395966"/>
359 <brsynth:error value="11.000567449695138"/>
360 <brsynth:units value="kilojoule / mole"/>
361 </brsynth:thermo_dG0_prime>
362 <brsynth:thermo_dGm_prime>
363 <brsynth:value value="-153.36328074340173"/>
364 <brsynth:error value="11.000567449695138"/>
365 <brsynth:units value="kilojoule / mole"/>
366 </brsynth:thermo_dGm_prime>
367 <brsynth:thermo_dG_prime>
368 <brsynth:value value="-119.13360567395966"/>
369 <brsynth:error value="11.000567449695138"/>
370 <brsynth:units value="kilojoule / mole"/>
371 </brsynth:thermo_dG_prime>
372 <brsynth:thermo_dG>
373 <brsynth:value value="-1501.0650763644926"/>
374 <brsynth:error value="11.000567449695138"/>
375 <brsynth:units value="kilojoule / mole"/>
376 </brsynth:thermo_dG>
377 </brsynth:brsynth>
378 </rdf:BRSynth>
379 </rdf:RDF>
380 </annotation>
381 <listOfReactants>
382 <speciesReference species="CMPD_0000000003" stoichiometry="1" constant="true"/>
383 </listOfReactants>
384 <listOfProducts>
385 <speciesReference species="CMPD_0000000001" stoichiometry="1" constant="true"/>
386 <speciesReference species="MNXM11" stoichiometry="2" constant="true"/>
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388 </reaction>
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442 </rdf:RDF>
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447 </listOfReactants>
448 <listOfProducts>
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450 <speciesReference species="TARGET_0000000001" stoichiometry="1" constant="true"/>
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452 </reaction>
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496 <groups:member groups:idRef="rxn_3"/>
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523 <groups:member groups:idRef="TARGET_0000000001"/>
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525 <groups:member groups:idRef="MNXM83"/>
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538 <groups:member groups:idRef="MNXM11"/>
539 <groups:member groups:idRef="MNXM35"/>
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552 <groups:member groups:idRef="MNXM83"/>
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580 <groups:member groups:idRef="TARGET_0000000001"/>
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582 </groups:group>
583 </groups:listOfGroups>
584 </model>
585 </sbml>