Mercurial > repos > tduigou > rptools_rpviz

annotate test-data/rp_003_0261.xml @ 1:1c8a408bd3fb draft

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planemo upload commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
author tduigou
date Wed, 16 Nov 2022 14:55:09 +0000
parents bf6f117ef632
children
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
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bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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1 <?xml version="1.0" encoding="UTF-8"?>
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2 <sbml xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:groups="http://www.sbml.org/sbml/level3/version1/groups/version1" xmlns:fbc="http://www.sbml.org/sbml/level3/version1/fbc/version2" level="3" version="1" groups:required="false" fbc:required="false">
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3 <model metaid="ab7a7ab71c6ccfe1bb89180d9a6fb504a8ea4784c1ace396ce99cb6892d1b81e" id="RP_model_003_0261" name="003_0261" substanceUnits="mole" timeUnits="second" extentUnits="mole" fbc:strict="true">
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4 <listOfCompartments>
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5 <compartment metaid="_2e7d2c03a9507ae265ecf5b5356885a53393a2029d241394997265a1a25aefc6" sboTerm="SBO:0000290" id="c" name="cytosol" size="1" constant="true">
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6 <annotation>
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7 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
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8 <rdf:Description rdf:about="#_2e7d2c03a9507ae265ecf5b5356885a53393a2029d241394997265a1a25aefc6">
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9 <bqbiol:is>
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10 <rdf:Bag>
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11 <rdf:li rdf:resource="http://identifiers.org/bigg.compartment/c"/>
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12 <rdf:li rdf:resource="http://identifiers.org/bigg.compartment/c_c"/>
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13 <rdf:li rdf:resource="http://identifiers.org/metanetx.compartment/MNXC3"/>
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14 <rdf:li rdf:resource="http://identifiers.org/seed/c"/>
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15 <rdf:li rdf:resource="http://identifiers.org/seed/c0"/>
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16 <rdf:li rdf:resource="http://identifiers.org/seed/cytosol"/>
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17 <rdf:li rdf:resource="http://identifiers.org/name/cytosol"/>
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18 </rdf:Bag>
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19 </bqbiol:is>
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20 </rdf:Description>
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21 </rdf:RDF>
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22 </annotation>
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23 </compartment>
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24 </listOfCompartments>
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25 <listOfSpecies>
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26 <species metaid="_10a025d408ecc91b5894e1d66d8a31d96e4ac530a63de61f99720be74086a29f" id="MNXM34" name="MNXM34" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
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27 <annotation>
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28 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
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29 <rdf:Description rdf:about="#_10a025d408ecc91b5894e1d66d8a31d96e4ac530a63de61f99720be74086a29f">
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30 <bqbiol:is>
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31 <rdf:Bag/>
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32 </bqbiol:is>
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33 </rdf:Description>
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34 <rdf:BRSynth rdf:about="#_10a025d408ecc91b5894e1d66d8a31d96e4ac530a63de61f99720be74086a29f">
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35 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
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36 <brsynth:smiles value="[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H]"/>
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37 <brsynth:inchi value="InChI=1S/C15H28O7P2/c1-13(2)7-5-8-14(3)9-6-10-15(4)11-12-21-24(19,20)22-23(16,17)18/h7,9,11H,5-6,8,10,12H2,1-4H3,(H,19,20)(H2,16,17,18)"/>
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38 <brsynth:inchikey value="VWFJDQUYCIWHTN-UHFFFAOYSA-N"/>
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39 <brsynth:fba_biomass_shadow_price>
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40 <brsynth:value value="None"/>
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41 </brsynth:fba_biomass_shadow_price>
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42 <brsynth:fba_fraction_shadow_price>
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43 <brsynth:value value="None"/>
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44 </brsynth:fba_fraction_shadow_price>
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45 <brsynth:thermo_standard_dg_formation>
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46 <brsynth:value value="-1607.8991259717538"/>
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47 <brsynth:units value="kilojoule / mole"/>
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48 </brsynth:thermo_standard_dg_formation>
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49 </brsynth:brsynth>
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50 </rdf:BRSynth>
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51 </rdf:RDF>
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52 </annotation>
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53 </species>
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54 <species metaid="_2c27bb432be6149f648dcec0e702fd9bdf6449fb9f730bd86eeb0b63b93d8858" id="CMPD_0000000003" name="CMPD_0000000003" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
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55 <annotation>
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56 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
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57 <rdf:Description rdf:about="#_2c27bb432be6149f648dcec0e702fd9bdf6449fb9f730bd86eeb0b63b93d8858">
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58 <bqbiol:is>
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59 <rdf:Bag/>
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60 </bqbiol:is>
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61 </rdf:Description>
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62 <rdf:BRSynth rdf:about="#_2c27bb432be6149f648dcec0e702fd9bdf6449fb9f730bd86eeb0b63b93d8858">
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63 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
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64 <brsynth:smiles value="[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H]"/>
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65 <brsynth:inchi value="InChI=1S/C20H36O7P2/c1-17(2)9-6-10-18(3)11-7-12-19(4)13-8-14-20(5)15-16-26-29(24,25)27-28(21,22)23/h9,11,13,15H,6-8,10,12,14,16H2,1-5H3,(H,24,25)(H2,21,22,23)"/>
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66 <brsynth:inchikey value="OINNEUNVOZHBOX-UHFFFAOYSA-N"/>
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67 <brsynth:fba_biomass_shadow_price>
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68 <brsynth:value value="-0.4636266049503492"/>
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69 </brsynth:fba_biomass_shadow_price>
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70 <brsynth:fba_fraction_shadow_price>
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71 <brsynth:value value="-0.9959432048681541"/>
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72 </brsynth:fba_fraction_shadow_price>
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73 <brsynth:thermo_standard_dg_formation>
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parents:
diff changeset
74 <brsynth:value value="-1495.8281099920857"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
75 <brsynth:units value="kilojoule / mole"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
76 </brsynth:thermo_standard_dg_formation>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
77 </brsynth:brsynth>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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78 </rdf:BRSynth>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
79 </rdf:RDF>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
80 </annotation>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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diff changeset
81 </species>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
82 <species metaid="b0098569a07f786a6e9b2294639668cd4ee564dd642a38bdf429c4c6bb560b46" id="CMPD_0000000001" name="CMPD_0000000001" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
83 <annotation>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
84 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
85 <rdf:Description rdf:about="#b0098569a07f786a6e9b2294639668cd4ee564dd642a38bdf429c4c6bb560b46">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
86 <bqbiol:is>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
87 <rdf:Bag/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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88 </bqbiol:is>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
89 </rdf:Description>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
90 <rdf:BRSynth rdf:about="#b0098569a07f786a6e9b2294639668cd4ee564dd642a38bdf429c4c6bb560b46">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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91 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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92 <brsynth:smiles value="[H]C(=C([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H]"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
93 <brsynth:inchi value="InChI=1S/C40H64/c1-33(2)19-13-23-37(7)27-17-31-39(9)29-15-25-35(5)21-11-12-22-36(6)26-16-30-40(10)32-18-28-38(8)24-14-20-34(3)4/h11-12,19-22,27-30H,13-18,23-26,31-32H2,1-10H3"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
94 <brsynth:inchikey value="YVLPJIGOMTXXLP-UHFFFAOYSA-N"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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95 <brsynth:fba_biomass_shadow_price>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
96 <brsynth:value value="-0.46174576679639245"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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97 </brsynth:fba_biomass_shadow_price>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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98 <brsynth:fba_fraction_shadow_price>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
99 <brsynth:value value="-1.0"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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100 </brsynth:fba_fraction_shadow_price>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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101 <brsynth:thermo_standard_dg_formation>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
102 <brsynth:value value="936.7141451846444"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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103 <brsynth:units value="kilojoule / mole"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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104 </brsynth:thermo_standard_dg_formation>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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105 </brsynth:brsynth>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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106 </rdf:BRSynth>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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107 </rdf:RDF>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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108 </annotation>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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109 </species>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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110 <species metaid="_47d72a86d31940edf1cc42c7a7361a7a96211dc2a6679326b8ad27a7e216ada0" id="MNXM83" name="MNXM83" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
111 <annotation>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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112 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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113 <rdf:Description rdf:about="#_47d72a86d31940edf1cc42c7a7361a7a96211dc2a6679326b8ad27a7e216ada0">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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114 <bqbiol:is>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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115 <rdf:Bag/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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116 </bqbiol:is>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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117 </rdf:Description>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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118 <rdf:BRSynth rdf:about="#_47d72a86d31940edf1cc42c7a7361a7a96211dc2a6679326b8ad27a7e216ada0">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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119 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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120 <brsynth:smiles value="[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])([H])C(=C([H])[H])C([H])([H])[H]"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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121 <brsynth:inchi value="InChI=1S/C5H12O7P2/c1-5(2)3-4-11-14(9,10)12-13(6,7)8/h1,3-4H2,2H3,(H,9,10)(H2,6,7,8)"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
122 <brsynth:inchikey value="NUHSROFQTUXZQQ-UHFFFAOYSA-N"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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123 <brsynth:fba_biomass_shadow_price>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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124 <brsynth:value value="None"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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125 </brsynth:fba_biomass_shadow_price>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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126 <brsynth:fba_fraction_shadow_price>
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127 <brsynth:value value="None"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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128 </brsynth:fba_fraction_shadow_price>
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129 <brsynth:thermo_standard_dg_formation>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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130 <brsynth:value value="-1828.3274439664424"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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131 <brsynth:units value="kilojoule / mole"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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132 </brsynth:thermo_standard_dg_formation>
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133 </brsynth:brsynth>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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134 </rdf:BRSynth>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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135 </rdf:RDF>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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136 </annotation>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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137 </species>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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138 <species metaid="_6817bb5f7133f50744b232330f1f3009343f785b8f77602ce5f44cdd9458f002" id="TARGET_0000000001" name="TARGET_0000000001" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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139 <annotation>
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140 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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141 <rdf:Description rdf:about="#_6817bb5f7133f50744b232330f1f3009343f785b8f77602ce5f44cdd9458f002">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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142 <bqbiol:is>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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143 <rdf:Bag/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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144 </bqbiol:is>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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145 </rdf:Description>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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146 <rdf:BRSynth rdf:about="#_6817bb5f7133f50744b232330f1f3009343f785b8f77602ce5f44cdd9458f002">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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147 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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148 <brsynth:smiles value="[H]C(=C([H])C([H])=C(C([H])=C([H])C([H])=C(C([H])=C([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H])C([H])([H])[H])C([H])([H])[H])C([H])=C(C([H])=C([H])C([H])=C(C([H])=C([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H])C([H])([H])[H])C([H])([H])[H]"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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149 <brsynth:inchi value="InChI=1S/C40H56/c1-33(2)19-13-23-37(7)27-17-31-39(9)29-15-25-35(5)21-11-12-22-36(6)26-16-30-40(10)32-18-28-38(8)24-14-20-34(3)4/h11-12,15-22,25-32H,13-14,23-24H2,1-10H3"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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150 <brsynth:inchikey value="OAIJSZIZWZSQBC-UHFFFAOYSA-N"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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151 <brsynth:fba_biomass_shadow_price>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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152 <brsynth:value value="-0.46174576679639245"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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153 </brsynth:fba_biomass_shadow_price>
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154 <brsynth:fba_fraction_shadow_price>
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155 <brsynth:value value="-1.0"/>
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156 </brsynth:fba_fraction_shadow_price>
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157 <brsynth:thermo_standard_dg_formation>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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diff changeset
158 <brsynth:value value="1245.5794452419402"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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159 <brsynth:units value="kilojoule / mole"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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160 </brsynth:thermo_standard_dg_formation>
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161 </brsynth:brsynth>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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162 </rdf:BRSynth>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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163 </rdf:RDF>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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164 </annotation>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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165 </species>
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166 <species metaid="a6e267be12defb7184259624f5adc519108c6c6adfe6be13f64b649567cb6df1" id="MNXM11" name="MNXM11" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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167 <annotation>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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168 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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169 <rdf:Description rdf:about="#a6e267be12defb7184259624f5adc519108c6c6adfe6be13f64b649567cb6df1">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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170 <bqbiol:is>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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171 <rdf:Bag/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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172 </bqbiol:is>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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173 </rdf:Description>
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diff changeset
174 <rdf:BRSynth rdf:about="#a6e267be12defb7184259624f5adc519108c6c6adfe6be13f64b649567cb6df1">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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175 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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176 <brsynth:smiles value="O=P(O)(O)OP(=O)(O)O"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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177 <brsynth:inchi value="InChI=1S/H4O7P2/c1-8(2,3)7-9(4,5)6/h(H2,1,2,3)(H2,4,5,6)"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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178 <brsynth:inchikey value="XPPKVPWEQAFLFU-UHFFFAOYSA-N"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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179 <brsynth:fba_biomass_shadow_price>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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180 <brsynth:value value="None"/>
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181 </brsynth:fba_biomass_shadow_price>
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182 <brsynth:fba_fraction_shadow_price>
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183 <brsynth:value value="None"/>
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184 </brsynth:fba_fraction_shadow_price>
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185 <brsynth:thermo_standard_dg_formation>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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186 <brsynth:value value="-1966.8036657706114"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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187 <brsynth:units value="kilojoule / mole"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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188 </brsynth:thermo_standard_dg_formation>
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189 </brsynth:brsynth>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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190 </rdf:BRSynth>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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191 </rdf:RDF>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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192 </annotation>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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193 </species>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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194 <species metaid="_61841f05183ff06dbe77a0e01f6d73d7a890997d823ac18d9fd56bac3d4bcc39" id="MNXM24" name="MNXM24" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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195 <annotation>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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196 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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197 <rdf:Description rdf:about="#_61841f05183ff06dbe77a0e01f6d73d7a890997d823ac18d9fd56bac3d4bcc39">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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198 <bqbiol:is>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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199 <rdf:Bag/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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200 </bqbiol:is>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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201 </rdf:Description>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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202 <rdf:BRSynth rdf:about="#_61841f05183ff06dbe77a0e01f6d73d7a890997d823ac18d9fd56bac3d4bcc39">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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203 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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204 <brsynth:smiles/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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205 <brsynth:inchi/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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206 <brsynth:inchikey/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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207 <brsynth:fba_biomass_shadow_price>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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208 <brsynth:value value="None"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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209 </brsynth:fba_biomass_shadow_price>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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210 <brsynth:fba_fraction_shadow_price>
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211 <brsynth:value value="None"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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212 </brsynth:fba_fraction_shadow_price>
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213 <brsynth:thermo_standard_dg_formation>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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214 <brsynth:value value="-2256.1898491337233"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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215 <brsynth:units value="kilojoule / mole"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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216 </brsynth:thermo_standard_dg_formation>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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217 </brsynth:brsynth>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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218 </rdf:BRSynth>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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219 </rdf:RDF>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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220 </annotation>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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221 </species>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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222 <species metaid="_53be86b11fa13c25dcb440bba6ef77b51b257a3674e6b2a0b88d272dc0a014cb" id="MNXM35" name="MNXM35" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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223 <annotation>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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224 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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225 <rdf:Description rdf:about="#_53be86b11fa13c25dcb440bba6ef77b51b257a3674e6b2a0b88d272dc0a014cb">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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226 <bqbiol:is>
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227 <rdf:Bag/>
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228 </bqbiol:is>
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229 </rdf:Description>
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230 <rdf:BRSynth rdf:about="#_53be86b11fa13c25dcb440bba6ef77b51b257a3674e6b2a0b88d272dc0a014cb">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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231 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
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232 <brsynth:smiles/>
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233 <brsynth:inchi/>
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234 <brsynth:inchikey/>
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235 <brsynth:fba_biomass_shadow_price>
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236 <brsynth:value value="None"/>
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237 </brsynth:fba_biomass_shadow_price>
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238 <brsynth:fba_fraction_shadow_price>
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239 <brsynth:value value="None"/>
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240 </brsynth:fba_fraction_shadow_price>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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241 <brsynth:thermo_standard_dg_formation>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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242 <brsynth:value value="-2172.1728715236113"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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243 <brsynth:units value="kilojoule / mole"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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244 </brsynth:thermo_standard_dg_formation>
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245 </brsynth:brsynth>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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246 </rdf:BRSynth>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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247 </rdf:RDF>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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248 </annotation>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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249 </species>
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250 </listOfSpecies>
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251 <listOfParameters>
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252 <parameter metaid="dc937b59892604f5a86ac96936cd7ff09e25f18ae6b758e8014a24c7fa039e91" sboTerm="SBO:0000625" id="BRS_FBC_10000_0" value="10000" constant="true"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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253 <parameter metaid="dc937b59892604f5a86ac96936cd7ff09e25f18ae6b758e8014a24c7fa039e91" sboTerm="SBO:0000625" id="BRS_FBC_0_0" value="0" constant="true"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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254 </listOfParameters>
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255 <listOfReactions>
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256 <reaction metaid="_7af1776cbbaecbf874d7f576d21891f6ad79e3b7c2e726cfd2ee9f5bd6f483c4" sboTerm="SBO:0000176" id="rxn_1" reversible="false" fast="false" fbc:lowerFluxBound="BRS_FBC_0_0" fbc:upperFluxBound="BRS_FBC_10000_0">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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257 <annotation>
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258 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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259 <rdf:Description rdf:about="#_7af1776cbbaecbf874d7f576d21891f6ad79e3b7c2e726cfd2ee9f5bd6f483c4">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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260 <bqbiol:is>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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261 <rdf:Bag>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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262 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.10"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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263 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.68"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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264 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.29"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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265 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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266 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.-"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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267 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.88"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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268 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.81"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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269 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.31"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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270 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.84"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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271 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.85"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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272 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.92"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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273 </rdf:Bag>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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274 </bqbiol:is>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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275 </rdf:Description>
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276 <rdf:BRSynth rdf:about="#_7af1776cbbaecbf874d7f576d21891f6ad79e3b7c2e726cfd2ee9f5bd6f483c4">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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277 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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278 <brsynth:smiles value="[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H].[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])([H])C(=C([H])[H])C([H])([H])[H]&gt;&gt;[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H].O=P(O)(O)OP(=O)(O)O"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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279 <brsynth:rp2_transfo_id value="TRS_0_2_742"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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280 <brsynth:rule_ids>
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281 <brsynth:RR-02-07adee9ac9c42c7d-14-F/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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282 <brsynth:RR-02-1494429c7e6e0694-14-F/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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283 <brsynth:RR-02-1d50852f3f343682-14-F/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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284 <brsynth:RR-02-3bf131230c6b2bf2-14-F/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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285 <brsynth:RR-02-58d0f0d25e47b74a-14-F/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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286 <brsynth:RR-02-b3db29f084fc7a81-14-F/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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287 <brsynth:RR-02-f9759fe03c57b29f-14-F/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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288 </brsynth:rule_ids>
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289 <brsynth:tmpl_rxn_ids>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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290 <brsynth:MNXR100137/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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291 <brsynth:MNXR112247/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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292 <brsynth:MNXR116653/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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293 <brsynth:MNXR100621/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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294 <brsynth:MNXR99634/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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295 <brsynth:MNXR112069/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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296 <brsynth:MNXR99650/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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297 <brsynth:MNXR109677/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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298 <brsynth:MNXR113141/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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299 <brsynth:MNXR105052/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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300 <brsynth:MNXR109713/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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301 <brsynth:MNXR110950/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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302 <brsynth:MNXR110952/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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303 <brsynth:MNXR112246/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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304 <brsynth:MNXR112250/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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305 <brsynth:MNXR112251/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
306 <brsynth:MNXR112252/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
307 <brsynth:MNXR116656/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
308 <brsynth:MNXR117266/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
309 <brsynth:MNXR139515/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
310 <brsynth:MNXR139637/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
311 <brsynth:MNXR112249/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
312 <brsynth:MNXR116655/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
313 <brsynth:MNXR103150/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
314 <brsynth:MNXR112248/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
315 <brsynth:MNXR116654/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
316 </brsynth:tmpl_rxn_ids>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
317 <brsynth:rule_score value="0.7358363677022237"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
318 <brsynth:idx_in_path value="1"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
319 <brsynth:selenzy/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
320 <brsynth:fba_biomass>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
321 <brsynth:value value="0.0"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
322 <brsynth:units value="gDW / gDW / hour"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
323 </brsynth:fba_biomass>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
324 <brsynth:fba_fraction>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
325 <brsynth:value value="0.4741875610167627"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
326 <brsynth:units value="milimole / gDW / hour"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
327 </brsynth:fba_fraction>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
328 <brsynth:thermo_dG0_prime>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
329 <brsynth:value value="-71.55654770059041"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
330 <brsynth:error value="2.9407032504945367"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
331 <brsynth:units value="kilojoule / mole"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
332 </brsynth:thermo_dG0_prime>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
333 <brsynth:thermo_dGm_prime>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
334 <brsynth:value value="-71.55654770059041"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
335 <brsynth:error value="2.9407032504945367"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
336 <brsynth:units value="kilojoule / mole"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
337 </brsynth:thermo_dGm_prime>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
338 <brsynth:thermo_dG_prime>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
339 <brsynth:value value="-71.55654770059041"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
340 <brsynth:error value="2.9407032504945367"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
341 <brsynth:units value="kilojoule / mole"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
342 </brsynth:thermo_dG_prime>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
343 <brsynth:thermo_dG>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
344 <brsynth:value value="-26.40520582450108"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
345 <brsynth:error value="2.9407032504945367"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
346 <brsynth:units value="kilojoule / mole"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
347 </brsynth:thermo_dG>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
348 </brsynth:brsynth>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
349 </rdf:BRSynth>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
350 </rdf:RDF>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
351 </annotation>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
352 <listOfReactants>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
353 <speciesReference species="MNXM34" stoichiometry="1" constant="true"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
354 <speciesReference species="MNXM83" stoichiometry="1" constant="true"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
355 </listOfReactants>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
356 <listOfProducts>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
357 <speciesReference species="CMPD_0000000003" stoichiometry="1" constant="true"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
358 <speciesReference species="MNXM11" stoichiometry="1" constant="true"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
359 </listOfProducts>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
360 </reaction>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
361 <reaction metaid="c9c2d56fd0ad9d5b8cd80acad4b5df22945ab4de50db7b24db52a91a7560c3ff" sboTerm="SBO:0000176" id="rxn_2" reversible="false" fast="false" fbc:lowerFluxBound="BRS_FBC_0_0" fbc:upperFluxBound="BRS_FBC_10000_0">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
362 <annotation>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
363 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
364 <rdf:Description rdf:about="#c9c2d56fd0ad9d5b8cd80acad4b5df22945ab4de50db7b24db52a91a7560c3ff">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
365 <bqbiol:is>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
366 <rdf:Bag>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
367 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.96"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
368 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.99"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
369 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.32"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
370 </rdf:Bag>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
371 </bqbiol:is>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
372 </rdf:Description>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
373 <rdf:BRSynth rdf:about="#c9c2d56fd0ad9d5b8cd80acad4b5df22945ab4de50db7b24db52a91a7560c3ff">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
374 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
375 <brsynth:smiles value="[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H]&gt;&gt;[H]C(=C([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H].O=P(O)(O)OP(=O)(O)O.O=P(O)(O)OP(=O)(O)O"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
376 <brsynth:rp2_transfo_id value="TRS_0_1_9"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
377 <brsynth:rule_ids>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
378 <brsynth:RR-02-bedda4e2f5001e0c-14-F/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
379 </brsynth:rule_ids>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
380 <brsynth:tmpl_rxn_ids>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
381 <brsynth:MNXR111250/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
382 <brsynth:MNXR111499/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
383 <brsynth:MNXR113543/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
384 <brsynth:MNXR118024/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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diff changeset
385 <brsynth:MNXR139549/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
386 </brsynth:tmpl_rxn_ids>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
387 <brsynth:rule_score value="0.5518755963407151"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
388 <brsynth:idx_in_path value="2"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
389 <brsynth:selenzy/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
390 <brsynth:fba_biomass>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
391 <brsynth:value value="0.0"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
392 <brsynth:units value="gDW / gDW / hour"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
393 </brsynth:fba_biomass>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
394 <brsynth:fba_fraction>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
395 <brsynth:value value="0.4741875610167627"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
396 <brsynth:units value="milimole / gDW / hour"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
397 </brsynth:fba_fraction>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
398 <brsynth:thermo_dG0_prime>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
399 <brsynth:value value="-119.13360567395966"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
400 <brsynth:error value="11.000567449695138"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
401 <brsynth:units value="kilojoule / mole"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
402 </brsynth:thermo_dG0_prime>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
403 <brsynth:thermo_dGm_prime>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
404 <brsynth:value value="-153.36328074340173"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
405 <brsynth:error value="11.000567449695138"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
406 <brsynth:units value="kilojoule / mole"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
407 </brsynth:thermo_dGm_prime>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
408 <brsynth:thermo_dG_prime>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
409 <brsynth:value value="-119.13360567395966"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
410 <brsynth:error value="11.000567449695138"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
411 <brsynth:units value="kilojoule / mole"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
412 </brsynth:thermo_dG_prime>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
413 <brsynth:thermo_dG>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
414 <brsynth:value value="-1501.0650763644926"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
415 <brsynth:error value="11.000567449695138"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
416 <brsynth:units value="kilojoule / mole"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
417 </brsynth:thermo_dG>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
418 </brsynth:brsynth>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
419 </rdf:BRSynth>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
420 </rdf:RDF>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
421 </annotation>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
422 <listOfReactants>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
423 <speciesReference species="CMPD_0000000003" stoichiometry="1" constant="true"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
424 </listOfReactants>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
425 <listOfProducts>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
426 <speciesReference species="CMPD_0000000001" stoichiometry="1" constant="true"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
427 <speciesReference species="MNXM11" stoichiometry="2" constant="true"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
428 </listOfProducts>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
429 </reaction>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
430 <reaction metaid="_376841fa42ba139764a5509b9d817e2e540d0e228582c970025c73ae1ee77c0d" sboTerm="SBO:0000176" id="rxn_3" reversible="false" fast="false" fbc:lowerFluxBound="BRS_FBC_0_0" fbc:upperFluxBound="BRS_FBC_10000_0">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
431 <annotation>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
432 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
433 <rdf:Description rdf:about="#_376841fa42ba139764a5509b9d817e2e540d0e228582c970025c73ae1ee77c0d">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
434 <bqbiol:is>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
435 <rdf:Bag>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
436 <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.99.31"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
437 </rdf:Bag>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
438 </bqbiol:is>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
439 </rdf:Description>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
440 <rdf:BRSynth rdf:about="#_376841fa42ba139764a5509b9d817e2e540d0e228582c970025c73ae1ee77c0d">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
441 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
442 <brsynth:smiles value="[H]C(=C([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H]&gt;&gt;[H]C(=C([H])C([H])=C(C([H])=C([H])C([H])=C(C([H])=C([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H])C([H])([H])[H])C([H])([H])[H])C([H])=C(C([H])=C([H])C([H])=C(C([H])=C([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H])C([H])([H])[H])C([H])([H])[H]"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
443 <brsynth:rp2_transfo_id value="TRS_0_0_1"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
444 <brsynth:rule_ids>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
445 <brsynth:RR-02-ae41ec5771136ea5-14-F/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
446 </brsynth:rule_ids>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
447 <brsynth:tmpl_rxn_ids>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
448 <brsynth:MNXR125832/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
449 </brsynth:tmpl_rxn_ids>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
450 <brsynth:rule_score value="0.7358363677022237"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
451 <brsynth:idx_in_path value="3"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
452 <brsynth:selenzy/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
453 <brsynth:fba_biomass>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
454 <brsynth:value value="0.0"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
455 <brsynth:units value="gDW / gDW / hour"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
456 </brsynth:fba_biomass>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
457 <brsynth:fba_fraction>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
458 <brsynth:value value="0.4741875610167627"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
459 <brsynth:units value="milimole / gDW / hour"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
460 </brsynth:fba_fraction>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
461 <brsynth:thermo_dG0_prime>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
462 <brsynth:value value="162.18254376952495"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
463 <brsynth:error value="12.808033567928218"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
464 <brsynth:units value="kilojoule / mole"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
465 </brsynth:thermo_dG0_prime>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
466 <brsynth:thermo_dGm_prime>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
467 <brsynth:value value="162.18254376952495"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
468 <brsynth:error value="12.808033567928218"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
469 <brsynth:units value="kilojoule / mole"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
470 </brsynth:thermo_dGm_prime>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
471 <brsynth:thermo_dG_prime>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
472 <brsynth:value value="162.18254376952495"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
473 <brsynth:error value="12.808033567928218"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
474 <brsynth:units value="kilojoule / mole"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
475 </brsynth:thermo_dG_prime>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
476 <brsynth:thermo_dG>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
477 <brsynth:value value="-27.202610383152432"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
478 <brsynth:error value="12.808033567928218"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
479 <brsynth:units value="kilojoule / mole"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
480 </brsynth:thermo_dG>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
481 </brsynth:brsynth>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
482 </rdf:BRSynth>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
483 </rdf:RDF>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
484 </annotation>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
485 <listOfReactants>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
486 <speciesReference species="CMPD_0000000001" stoichiometry="1" constant="true"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
487 <speciesReference species="MNXM35" stoichiometry="4" constant="true"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
488 </listOfReactants>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
489 <listOfProducts>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
490 <speciesReference species="MNXM24" stoichiometry="4" constant="true"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
491 <speciesReference species="TARGET_0000000001" stoichiometry="1" constant="true"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
492 </listOfProducts>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
493 </reaction>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
494 </listOfReactions>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
495 <groups:listOfGroups>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
496 <groups:group metaid="_93eef40c447d295fa61df9270c5fd909ec2ba7ee9883090552c0466873cd4299" groups:id="rp_pathway" groups:kind="collection">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
497 <annotation>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
498 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
499 <rdf:BRSynth rdf:about="#_93eef40c447d295fa61df9270c5fd909ec2ba7ee9883090552c0466873cd4299">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
500 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
501 <brsynth:fba_biomass>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
502 <brsynth:value value="0.8769972144269784"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
503 <brsynth:units value="gDW / gDW / hour"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
504 </brsynth:fba_biomass>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
505 <brsynth:fba_fraction>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
506 <brsynth:value value="0.4741875610167627"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
507 <brsynth:units value="milimole / gDW / hour"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
508 </brsynth:fba_fraction>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
509 <brsynth:thermo_dG0_prime>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
510 <brsynth:value value="-28.507609605022708"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
511 <brsynth:error value="19.469504383090346"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
512 <brsynth:units value="kilojoule / mole"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
513 </brsynth:thermo_dG0_prime>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
514 <brsynth:thermo_dGm_prime>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
515 <brsynth:value value="-62.737284674464775"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
516 <brsynth:error value="19.469504383090346"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
517 <brsynth:units value="kilojoule / mole"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
518 </brsynth:thermo_dGm_prime>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
519 <brsynth:thermo_dG_prime>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
520 <brsynth:value value="-28.507609605022708"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
521 <brsynth:error value="19.469504383090346"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
522 <brsynth:units value="kilojoule / mole"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
523 </brsynth:thermo_dG_prime>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
524 <brsynth:thermo_dG>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
525 <brsynth:value value="-1554.6728925721447"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
526 <brsynth:error value="19.469504383090346"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
527 <brsynth:units value="kilojoule / mole"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
528 </brsynth:thermo_dG>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
529 <brsynth:global_score value="0.9863117098808288"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
530 </brsynth:brsynth>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
531 </rdf:BRSynth>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
532 </rdf:RDF>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
533 </annotation>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
534 <groups:listOfMembers>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
535 <groups:member groups:idRef="rxn_1"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
536 <groups:member groups:idRef="rxn_2"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
537 <groups:member groups:idRef="rxn_3"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
538 </groups:listOfMembers>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
539 </groups:group>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
540 <groups:group metaid="_613b064337553014ede418c67180137a4561ff11b13f3bfa1a2765ef37ac375a" groups:id="rp_intermediate_species" groups:kind="collection">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
541 <annotation>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
542 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
543 <rdf:BRSynth rdf:about="#_613b064337553014ede418c67180137a4561ff11b13f3bfa1a2765ef37ac375a">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
544 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
545 </rdf:BRSynth>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
546 </rdf:RDF>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
547 </annotation>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
548 <groups:listOfMembers>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
549 <groups:member groups:idRef="CMPD_0000000003"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
diff changeset
550 <groups:member groups:idRef="CMPD_0000000001"/>
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bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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tduigou
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bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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557 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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558 </rdf:BRSynth>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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tduigou
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bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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tduigou
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bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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tduigou
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570 <annotation>
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tduigou
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bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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tduigou
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573 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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574 </rdf:BRSynth>
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tduigou
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bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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tduigou
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bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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581 </groups:listOfMembers>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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582 </groups:group>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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tduigou
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diff changeset
584 <annotation>
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tduigou
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585 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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tduigou
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587 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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588 </rdf:BRSynth>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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589 </rdf:RDF>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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590 </annotation>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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591 <groups:listOfMembers>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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592 <groups:member groups:idRef="MNXM34"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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593 <groups:member groups:idRef="MNXM11"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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594 <groups:member groups:idRef="MNXM83"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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595 </groups:listOfMembers>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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596 </groups:group>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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597 <groups:group metaid="a0f48a6fe4f833a3d15abd7ee5b944b97d629570ac09588e9fb6fdf6196ab189" groups:id="rp_fba_ignored_species" groups:kind="collection">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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598 <annotation>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
parents:
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599 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
tduigou
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601 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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602 </rdf:BRSynth>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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603 </rdf:RDF>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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604 </annotation>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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605 <groups:listOfMembers>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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606 <groups:member groups:idRef="MNXM24"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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607 <groups:member groups:idRef="MNXM35"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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608 </groups:listOfMembers>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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609 </groups:group>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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610 <groups:group metaid="fb9b29ba20af773fed953f1d6726905a453f235c9a4baa7217f02760bc2057f8" groups:id="rp_thermo_substituted_species" groups:kind="collection">
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611 <annotation>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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612 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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613 <rdf:BRSynth rdf:about="#fb9b29ba20af773fed953f1d6726905a453f235c9a4baa7217f02760bc2057f8">
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614 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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615 </rdf:BRSynth>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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616 </rdf:RDF>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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617 </annotation>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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618 <groups:listOfMembers>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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619 <groups:member groups:idRef="TARGET_0000000001"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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620 <groups:member groups:idRef="MNXM24"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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621 <groups:member groups:idRef="MNXM35"/>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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622 </groups:listOfMembers>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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623 </groups:group>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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624 </groups:listOfGroups>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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625 </model>
bf6f117ef632 planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
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626 </sbml>