Mercurial > repos > tduigou > rptools_rpviz

annotate test-data/rp_001_0001_rpfba_in.xml @ 3:9588a5b84518 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 044274b46d50a1d0e3708e80e0dfecf1de653c65
author tduigou
date Thu, 02 Nov 2023 14:37:19 +0000
parents 1c8a408bd3fb
children
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1 <?xml version="1.0" encoding="UTF-8"?>
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2 <sbml xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:groups="http://www.sbml.org/sbml/level3/version1/groups/version1" xmlns:fbc="http://www.sbml.org/sbml/level3/version1/fbc/version2" level="3" version="1" groups:required="false" fbc:required="false">
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3 <model metaid="a03e1bf0f20b54a66f7b4ce262ea6b0f7579c0a1e47144a649b9e2e711f6b3ed" id="RP_model_001_0001" name="001_0001" substanceUnits="mole" timeUnits="second" extentUnits="mole" fbc:strict="true">
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4 <listOfCompartments>
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5 <compartment metaid="_2e7d2c03a9507ae265ecf5b5356885a53393a2029d241394997265a1a25aefc6" sboTerm="SBO:0000290" id="c" name="cytosol" size="1" constant="true">
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6 <annotation>
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7 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
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8 <rdf:Description rdf:about="#_2e7d2c03a9507ae265ecf5b5356885a53393a2029d241394997265a1a25aefc6">
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9 <bqbiol:is>
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10 <rdf:Bag>
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11 <rdf:li rdf:resource="http://identifiers.org/bigg.compartment/c"/>
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12 <rdf:li rdf:resource="http://identifiers.org/bigg.compartment/c_c"/>
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13 <rdf:li rdf:resource="http://identifiers.org/metanetx.compartment/MNXC3"/>
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14 <rdf:li rdf:resource="http://identifiers.org/seed/c"/>
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15 <rdf:li rdf:resource="http://identifiers.org/seed/c0"/>
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16 <rdf:li rdf:resource="http://identifiers.org/seed/cytosol"/>
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17 <rdf:li rdf:resource="http://identifiers.org/name/cytosol"/>
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18 </rdf:Bag>
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19 </bqbiol:is>
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20 </rdf:Description>
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21 </rdf:RDF>
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22 </annotation>
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23 </compartment>
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24 </listOfCompartments>
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25 <listOfSpecies>
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26 <species metaid="_6817bb5f7133f50744b232330f1f3009343f785b8f77602ce5f44cdd9458f002" id="TARGET_0000000001" name="TARGET_0000000001" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
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27 <annotation>
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28 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
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29 <rdf:Description rdf:about="#_6817bb5f7133f50744b232330f1f3009343f785b8f77602ce5f44cdd9458f002">
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30 <bqbiol:is>
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31 <rdf:Bag/>
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32 </bqbiol:is>
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33 </rdf:Description>
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34 <rdf:BRSynth rdf:about="#_6817bb5f7133f50744b232330f1f3009343f785b8f77602ce5f44cdd9458f002">
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35 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
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36 <brsynth:smiles value="[H]C(=C([H])C([H])=C(C([H])=C([H])C([H])=C(C([H])=C([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H])C([H])([H])[H])C([H])([H])[H])C([H])=C(C([H])=C([H])C([H])=C(C([H])=C([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H])C([H])([H])[H])C([H])([H])[H]"/>
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37 <brsynth:inchi value="InChI=1S/C40H56/c1-33(2)19-13-23-37(7)27-17-31-39(9)29-15-25-35(5)21-11-12-22-36(6)26-16-30-40(10)32-18-28-38(8)24-14-20-34(3)4/h11-12,15-22,25-32H,13-14,23-24H2,1-10H3"/>
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38 <brsynth:inchikey value="OAIJSZIZWZSQBC-UHFFFAOYSA-N"/>
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39 </brsynth:brsynth>
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40 </rdf:BRSynth>
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41 </rdf:RDF>
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42 </annotation>
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43 </species>
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44 <species metaid="_47d72a86d31940edf1cc42c7a7361a7a96211dc2a6679326b8ad27a7e216ada0" id="MNXM83" name="isopentenyl diphosphate" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
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45 <annotation>
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46 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
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47 <rdf:Description rdf:about="#_47d72a86d31940edf1cc42c7a7361a7a96211dc2a6679326b8ad27a7e216ada0">
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48 <bqbiol:is>
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49 <rdf:Bag/>
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50 </bqbiol:is>
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51 </rdf:Description>
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52 <rdf:BRSynth rdf:about="#_47d72a86d31940edf1cc42c7a7361a7a96211dc2a6679326b8ad27a7e216ada0">
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53 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
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54 <brsynth:smiles value="[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])([H])C(=C([H])[H])C([H])([H])[H]"/>
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55 <brsynth:inchi value="InChI=1S/C5H12O7P2/c1-5(2)3-4-11-14(9,10)12-13(6,7)8/h1,3-4H2,2H3,(H,9,10)(H2,6,7,8)"/>
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56 <brsynth:inchikey value="NUHSROFQTUXZQQ-UHFFFAOYSA-N"/>
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57 </brsynth:brsynth>
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58 </rdf:BRSynth>
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59 </rdf:RDF>
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60 </annotation>
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61 </species>
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62 <species metaid="a6e267be12defb7184259624f5adc519108c6c6adfe6be13f64b649567cb6df1" id="MNXM11" name="diphosphate" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
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63 <annotation>
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64 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
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65 <rdf:Description rdf:about="#a6e267be12defb7184259624f5adc519108c6c6adfe6be13f64b649567cb6df1">
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66 <bqbiol:is>
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67 <rdf:Bag/>
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68 </bqbiol:is>
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69 </rdf:Description>
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70 <rdf:BRSynth rdf:about="#a6e267be12defb7184259624f5adc519108c6c6adfe6be13f64b649567cb6df1">
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71 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
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72 <brsynth:smiles value="O=P(O)(O)OP(=O)(O)O"/>
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73 <brsynth:inchi value="InChI=1S/H4O7P2/c1-8(2,3)7-9(4,5)6/h(H2,1,2,3)(H2,4,5,6)"/>
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74 <brsynth:inchikey value="XPPKVPWEQAFLFU-UHFFFAOYSA-N"/>
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75 </brsynth:brsynth>
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76 </rdf:BRSynth>
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77 </rdf:RDF>
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78 </annotation>
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79 </species>
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80 <species metaid="_61841f05183ff06dbe77a0e01f6d73d7a890997d823ac18d9fd56bac3d4bcc39" id="MNXM24" name="MNXM24" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
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81 <annotation>
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82 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
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83 <rdf:Description rdf:about="#_61841f05183ff06dbe77a0e01f6d73d7a890997d823ac18d9fd56bac3d4bcc39">
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84 <bqbiol:is>
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85 <rdf:Bag/>
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86 </bqbiol:is>
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87 </rdf:Description>
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88 <rdf:BRSynth rdf:about="#_61841f05183ff06dbe77a0e01f6d73d7a890997d823ac18d9fd56bac3d4bcc39">
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89 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
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90 <brsynth:smiles/>
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91 <brsynth:inchi/>
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92 <brsynth:inchikey/>
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93 </brsynth:brsynth>
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94 </rdf:BRSynth>
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95 </rdf:RDF>
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96 </annotation>
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97 </species>
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98 <species metaid="b0098569a07f786a6e9b2294639668cd4ee564dd642a38bdf429c4c6bb560b46" id="CMPD_0000000001" name="CMPD_0000000001" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
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99 <annotation>
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100 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
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101 <rdf:Description rdf:about="#b0098569a07f786a6e9b2294639668cd4ee564dd642a38bdf429c4c6bb560b46">
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102 <bqbiol:is>
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103 <rdf:Bag/>
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104 </bqbiol:is>
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105 </rdf:Description>
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106 <rdf:BRSynth rdf:about="#b0098569a07f786a6e9b2294639668cd4ee564dd642a38bdf429c4c6bb560b46">
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107 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
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108 <brsynth:smiles value="[H]C(=C([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H]"/>
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109 <brsynth:inchi value="InChI=1S/C40H64/c1-33(2)19-13-23-37(7)27-17-31-39(9)29-15-25-35(5)21-11-12-22-36(6)26-16-30-40(10)32-18-28-38(8)24-14-20-34(3)4/h11-12,19-22,27-30H,13-18,23-26,31-32H2,1-10H3"/>
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110 <brsynth:inchikey value="YVLPJIGOMTXXLP-UHFFFAOYSA-N"/>
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111 </brsynth:brsynth>
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112 </rdf:BRSynth>
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113 </rdf:RDF>
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114 </annotation>
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115 </species>
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116 <species metaid="_212c5940beac5625a2636d3d14fbc63cc5a8107d9dd39020ac544f296debabcc" id="MNXM132" name="dimethylallyl diphosphate" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
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117 <annotation>
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118 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
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119 <rdf:Description rdf:about="#_212c5940beac5625a2636d3d14fbc63cc5a8107d9dd39020ac544f296debabcc">
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120 <bqbiol:is>
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121 <rdf:Bag/>
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122 </bqbiol:is>
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123 </rdf:Description>
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124 <rdf:BRSynth rdf:about="#_212c5940beac5625a2636d3d14fbc63cc5a8107d9dd39020ac544f296debabcc">
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125 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
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126 <brsynth:smiles value="[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H]"/>
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127 <brsynth:inchi value="InChI=1S/C5H12O7P2/c1-5(2)3-4-11-14(9,10)12-13(6,7)8/h3H,4H2,1-2H3,(H,9,10)(H2,6,7,8)"/>
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128 <brsynth:inchikey value="CBIDRCWHNCKSTO-UHFFFAOYSA-N"/>
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129 </brsynth:brsynth>
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130 </rdf:BRSynth>
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131 </rdf:RDF>
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132 </annotation>
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133 </species>
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134 <species metaid="_2f4b2d21d00b43a266620e821de533b08c3e42ff09ca008f915ca4400eb7d8c4" id="MNXM8975" name="MNXM8975" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
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135 <annotation>
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136 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
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137 <rdf:Description rdf:about="#_2f4b2d21d00b43a266620e821de533b08c3e42ff09ca008f915ca4400eb7d8c4">
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138 <bqbiol:is>
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139 <rdf:Bag/>
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140 </bqbiol:is>
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141 </rdf:Description>
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142 <rdf:BRSynth rdf:about="#_2f4b2d21d00b43a266620e821de533b08c3e42ff09ca008f915ca4400eb7d8c4">
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143 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
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144 <brsynth:smiles/>
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145 <brsynth:inchi/>
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146 <brsynth:inchikey/>
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147 </brsynth:brsynth>
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148 </rdf:BRSynth>
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149 </rdf:RDF>
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150 </annotation>
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151 </species>
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152 <species metaid="_2c27bb432be6149f648dcec0e702fd9bdf6449fb9f730bd86eeb0b63b93d8858" id="CMPD_0000000003" name="CMPD_0000000003" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
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153 <annotation>
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154 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
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155 <rdf:Description rdf:about="#_2c27bb432be6149f648dcec0e702fd9bdf6449fb9f730bd86eeb0b63b93d8858">
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156 <bqbiol:is>
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157 <rdf:Bag/>
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158 </bqbiol:is>
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159 </rdf:Description>
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160 <rdf:BRSynth rdf:about="#_2c27bb432be6149f648dcec0e702fd9bdf6449fb9f730bd86eeb0b63b93d8858">
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161 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
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162 <brsynth:smiles value="[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H]"/>
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163 <brsynth:inchi value="InChI=1S/C20H36O7P2/c1-17(2)9-6-10-18(3)11-7-12-19(4)13-8-14-20(5)15-16-26-29(24,25)27-28(21,22)23/h9,11,13,15H,6-8,10,12,14,16H2,1-5H3,(H,24,25)(H2,21,22,23)"/>
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164 <brsynth:inchikey value="OINNEUNVOZHBOX-UHFFFAOYSA-N"/>
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165 </brsynth:brsynth>
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166 </rdf:BRSynth>
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167 </rdf:RDF>
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168 </annotation>
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169 </species>
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170 </listOfSpecies>
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171 <listOfParameters>
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172 <parameter metaid="dc937b59892604f5a86ac96936cd7ff09e25f18ae6b758e8014a24c7fa039e91" sboTerm="SBO:0000625" id="BRS_FBC_999999" value="999999" units="mmol_per_gDW_per_hr" constant="true"/>
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173 <parameter metaid="dc937b59892604f5a86ac96936cd7ff09e25f18ae6b758e8014a24c7fa039e91" sboTerm="SBO:0000625" id="BRS_FBC_0" value="0" units="mmol_per_gDW_per_hr" constant="true"/>
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174 </listOfParameters>
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175 <listOfReactions>
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176 <reaction metaid="_376841fa42ba139764a5509b9d817e2e540d0e228582c970025c73ae1ee77c0d" sboTerm="SBO:0000176" id="rxn_3" reversible="false" fast="false" fbc:lowerFluxBound="BRS_FBC_0" fbc:upperFluxBound="BRS_FBC_999999">
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177 <annotation>
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178 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
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179 <rdf:Description rdf:about="#_376841fa42ba139764a5509b9d817e2e540d0e228582c970025c73ae1ee77c0d">
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180 <bqbiol:is>
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181 <rdf:Bag>
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182 <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.99.31"/>
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183 </rdf:Bag>
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184 </bqbiol:is>
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185 </rdf:Description>
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186 <rdf:BRSynth rdf:about="#_376841fa42ba139764a5509b9d817e2e540d0e228582c970025c73ae1ee77c0d">
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187 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
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188 <brsynth:smiles value="[H]C(=C([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H]&gt;&gt;[H]C(=C([H])C([H])=C(C([H])=C([H])C([H])=C(C([H])=C([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H])C([H])([H])[H])C([H])([H])[H])C([H])=C(C([H])=C([H])C([H])=C(C([H])=C([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H])C([H])([H])[H])C([H])([H])[H]"/>
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189 <brsynth:rp2_transfo_id value="TRS_0_0_1"/>
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190 <brsynth:rule_ids>
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191 <brsynth:RR-02-bdf7d8715e2e4d93-16-F/>
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192 </brsynth:rule_ids>
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193 <brsynth:tmpl_rxn_ids>
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194 <brsynth:MNXR113128/>
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195 </brsynth:tmpl_rxn_ids>
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196 <brsynth:rule_score value="0.7486085128675456"/>
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197 <brsynth:idx_in_path value="3"/>
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198 </brsynth:brsynth>
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199 </rdf:BRSynth>
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200 </rdf:RDF>
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201 </annotation>
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202 <listOfReactants>
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203 <speciesReference species="CMPD_0000000001" stoichiometry="1" constant="true"/>
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204 <speciesReference species="MNXM8975" stoichiometry="4" constant="true"/>
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205 </listOfReactants>
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206 <listOfProducts>
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207 <speciesReference species="MNXM24" stoichiometry="4" constant="true"/>
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208 <speciesReference species="TARGET_0000000001" stoichiometry="1" constant="true"/>
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209 </listOfProducts>
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210 </reaction>
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211 <reaction metaid="c9c2d56fd0ad9d5b8cd80acad4b5df22945ab4de50db7b24db52a91a7560c3ff" sboTerm="SBO:0000176" id="rxn_2" reversible="false" fast="false" fbc:lowerFluxBound="BRS_FBC_0" fbc:upperFluxBound="BRS_FBC_999999">
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212 <annotation>
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213 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
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214 <rdf:Description rdf:about="#c9c2d56fd0ad9d5b8cd80acad4b5df22945ab4de50db7b24db52a91a7560c3ff">
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215 <bqbiol:is>
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216 <rdf:Bag>
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217 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.32"/>
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218 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.99"/>
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219 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.96"/>
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220 </rdf:Bag>
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221 </bqbiol:is>
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222 </rdf:Description>
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223 <rdf:BRSynth rdf:about="#c9c2d56fd0ad9d5b8cd80acad4b5df22945ab4de50db7b24db52a91a7560c3ff">
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224 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
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225 <brsynth:smiles value="[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H]&gt;&gt;[H]C(=C([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H].O=P(O)(O)OP(=O)(O)O.O=P(O)(O)OP(=O)(O)O"/>
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226 <brsynth:rp2_transfo_id value="TRS_0_1_9"/>
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227 <brsynth:rule_ids>
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228 <brsynth:RR-02-b25156a335e3e30f-16-F/>
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229 </brsynth:rule_ids>
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230 <brsynth:tmpl_rxn_ids>
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231 <brsynth:MNXR111250/>
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232 <brsynth:MNXR111499/>
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233 <brsynth:MNXR113543/>
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234 <brsynth:MNXR118024/>
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235 <brsynth:MNXR139549/>
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236 </brsynth:tmpl_rxn_ids>
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237 <brsynth:rule_score value="0.5683242688496836"/>
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238 <brsynth:idx_in_path value="2"/>
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239 </brsynth:brsynth>
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240 </rdf:BRSynth>
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241 </rdf:RDF>
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242 </annotation>
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243 <listOfReactants>
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244 <speciesReference species="CMPD_0000000003" stoichiometry="1" constant="true"/>
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245 </listOfReactants>
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246 <listOfProducts>
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247 <speciesReference species="CMPD_0000000001" stoichiometry="1" constant="true"/>
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248 <speciesReference species="MNXM11" stoichiometry="2" constant="true"/>
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249 </listOfProducts>
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250 </reaction>
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251 <reaction metaid="_7af1776cbbaecbf874d7f576d21891f6ad79e3b7c2e726cfd2ee9f5bd6f483c4" sboTerm="SBO:0000176" id="rxn_1" reversible="false" fast="false" fbc:lowerFluxBound="BRS_FBC_0" fbc:upperFluxBound="BRS_FBC_999999">
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252 <annotation>
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253 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
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254 <rdf:Description rdf:about="#_7af1776cbbaecbf874d7f576d21891f6ad79e3b7c2e726cfd2ee9f5bd6f483c4">
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255 <bqbiol:is>
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256 <rdf:Bag>
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257 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.29"/>
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258 </rdf:Bag>
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259 </bqbiol:is>
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260 </rdf:Description>
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261 <rdf:BRSynth rdf:about="#_7af1776cbbaecbf874d7f576d21891f6ad79e3b7c2e726cfd2ee9f5bd6f483c4">
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262 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
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263 <brsynth:smiles value="[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H].[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])([H])C(=C([H])[H])C([H])([H])[H]&gt;&gt;[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H].O=P(O)(O)OP(=O)(O)O.O=P(O)(O)OP(=O)(O)O.O=P(O)(O)OP(=O)(O)O"/>
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264 <brsynth:rp2_transfo_id value="TRS_0_2_363"/>
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265 <brsynth:rule_ids>
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266 <brsynth:RR-02-90bcfd187709eb1b-16-F/>
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267 </brsynth:rule_ids>
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268 <brsynth:tmpl_rxn_ids>
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269 <brsynth:MNXR132232/>
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270 </brsynth:tmpl_rxn_ids>
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271 <brsynth:rule_score value="0.5869134225065102"/>
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272 <brsynth:idx_in_path value="1"/>
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273 </brsynth:brsynth>
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274 </rdf:BRSynth>
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275 </rdf:RDF>
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276 </annotation>
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277 <listOfReactants>
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278 <speciesReference species="MNXM132" stoichiometry="1" constant="true"/>
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279 <speciesReference species="MNXM83" stoichiometry="1" constant="true"/>
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280 </listOfReactants>
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281 <listOfProducts>
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282 <speciesReference species="CMPD_0000000003" stoichiometry="1" constant="true"/>
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283 <speciesReference species="MNXM11" stoichiometry="3" constant="true"/>
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284 </listOfProducts>
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285 </reaction>
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286 </listOfReactions>
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287 <groups:listOfGroups>
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288 <groups:group metaid="_93eef40c447d295fa61df9270c5fd909ec2ba7ee9883090552c0466873cd4299" groups:id="rp_pathway" groups:kind="collection">
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289 <annotation>
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290 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
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291 <rdf:BRSynth rdf:about="#_93eef40c447d295fa61df9270c5fd909ec2ba7ee9883090552c0466873cd4299">
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292 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
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293 <brsynth:global_score value="-1"/>
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294 </brsynth:brsynth>
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295 </rdf:BRSynth>
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296 </rdf:RDF>
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297 </annotation>
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298 <groups:listOfMembers>
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299 <groups:member groups:idRef="rxn_1"/>
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300 <groups:member groups:idRef="rxn_2"/>
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301 <groups:member groups:idRef="rxn_3"/>
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302 </groups:listOfMembers>
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303 </groups:group>
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304 <groups:group metaid="_613b064337553014ede418c67180137a4561ff11b13f3bfa1a2765ef37ac375a" groups:id="rp_intermediate_species" groups:kind="collection">
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305 <annotation>
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306 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
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307 <rdf:BRSynth rdf:about="#_613b064337553014ede418c67180137a4561ff11b13f3bfa1a2765ef37ac375a">
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308 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/>
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309 </rdf:BRSynth>
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310 </rdf:RDF>
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311 </annotation>
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312 <groups:listOfMembers>
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313 <groups:member groups:idRef="CMPD_0000000003"/>
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314 <groups:member groups:idRef="CMPD_0000000001"/>
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315 </groups:listOfMembers>
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316 </groups:group>
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317 <groups:group metaid="_564fce39b23c6cf87d12dc2c612448384fd2cd980fe3fc07829e2ef802645579" groups:id="rp_trunk_species" groups:kind="collection">
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318 <annotation>
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319 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
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320 <rdf:BRSynth rdf:about="#_564fce39b23c6cf87d12dc2c612448384fd2cd980fe3fc07829e2ef802645579">
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321 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/>
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322 </rdf:BRSynth>
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323 </rdf:RDF>
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324 </annotation>
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325 <groups:listOfMembers>
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326 <groups:member groups:idRef="TARGET_0000000001"/>
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327 <groups:member groups:idRef="MNXM83"/>
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328 <groups:member groups:idRef="CMPD_0000000001"/>
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329 <groups:member groups:idRef="MNXM132"/>
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330 <groups:member groups:idRef="CMPD_0000000003"/>
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331 </groups:listOfMembers>
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332 </groups:group>
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333 <groups:group metaid="_9e3154173c97366b3980dd1642e1e35d0bdfc3274abc744e89ecb518bcd48378" groups:id="rp_completed_species" groups:kind="collection">
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334 <annotation>
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335 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
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336 <rdf:BRSynth rdf:about="#_9e3154173c97366b3980dd1642e1e35d0bdfc3274abc744e89ecb518bcd48378">
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337 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/>
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338 </rdf:BRSynth>
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339 </rdf:RDF>
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340 </annotation>
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341 <groups:listOfMembers>
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342 <groups:member groups:idRef="MNXM8975"/>
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343 <groups:member groups:idRef="MNXM24"/>
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344 <groups:member groups:idRef="MNXM11"/>
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345 </groups:listOfMembers>
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346 </groups:group>
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347 <groups:group metaid="_58b3b59284e0d918d6d3f3bcadc2d757726da7594cd899cad4e745836ac967a3" groups:id="rp_sink_species" groups:kind="collection">
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348 <annotation>
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349 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
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350 <rdf:BRSynth rdf:about="#_58b3b59284e0d918d6d3f3bcadc2d757726da7594cd899cad4e745836ac967a3">
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351 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/>
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352 </rdf:BRSynth>
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353 </rdf:RDF>
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354 </annotation>
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355 <groups:listOfMembers>
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356 <groups:member groups:idRef="MNXM83"/>
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357 <groups:member groups:idRef="MNXM132"/>
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358 <groups:member groups:idRef="MNXM11"/>
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359 </groups:listOfMembers>
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360 </groups:group>
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361 </groups:listOfGroups>
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362 </model>
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363 </sbml>