Mercurial > repos > tduigou > rptools_rpviz

comparison test-data/scored_pathway.xml @ 4:b98c2718a620 draft

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planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 387d0dd233c1d9948152a2d4af9e69ad10fe1b6a
author tduigou
date Thu, 23 Nov 2023 14:27:58 +0000
parents 9588a5b84518
children
comparison
equal deleted inserted replaced
3:9588a5b84518 4:b98c2718a620
6 <annotation> 6 <annotation>
7 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> 7 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
8 <rdf:Description rdf:about="#_2e7d2c03a9507ae265ecf5b5356885a53393a2029d241394997265a1a25aefc6"> 8 <rdf:Description rdf:about="#_2e7d2c03a9507ae265ecf5b5356885a53393a2029d241394997265a1a25aefc6">
9 <bqbiol:is> 9 <bqbiol:is>
10 <rdf:Bag> 10 <rdf:Bag>
11 <rdf:li rdf:resource="http://identifiers.org/bigg.compartment/c"/>
12 <rdf:li rdf:resource="http://identifiers.org/bigg.compartment/c_c"/>
13 <rdf:li rdf:resource="http://identifiers.org/metanetx.compartment/MNXC3"/>
11 <rdf:li rdf:resource="http://identifiers.org/seed/c"/> 14 <rdf:li rdf:resource="http://identifiers.org/seed/c"/>
12 <rdf:li rdf:resource="http://identifiers.org/seed/c0"/> 15 <rdf:li rdf:resource="http://identifiers.org/seed/c0"/>
13 <rdf:li rdf:resource="http://identifiers.org/seed/cytosol"/> 16 <rdf:li rdf:resource="http://identifiers.org/seed/cytosol"/>
14 </rdf:Bag> 17 </rdf:Bag>
15 </bqbiol:is> 18 </bqbiol:is>
17 </rdf:RDF> 20 </rdf:RDF>
18 </annotation> 21 </annotation>
19 </compartment> 22 </compartment>
20 </listOfCompartments> 23 </listOfCompartments>
21 <listOfSpecies> 24 <listOfSpecies>
25 <species metaid="fc3a2e5cd1a81a37f4065ad4b53b9e5009ace624c22100af7e69653ca4a2eae9" id="MNXM97" name="MNXM97" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
26 <annotation>
27 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
28 <rdf:Description rdf:about="#fc3a2e5cd1a81a37f4065ad4b53b9e5009ace624c22100af7e69653ca4a2eae9">
29 <bqbiol:is>
30 <rdf:Bag/>
31 </bqbiol:is>
32 </rdf:Description>
33 <rdf:BRSynth rdf:about="#fc3a2e5cd1a81a37f4065ad4b53b9e5009ace624c22100af7e69653ca4a2eae9">
34 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
35 <brsynth:smiles value="[H]OC(=O)C([H])(N([H])[H])C([H])([H])c1c([H])c([H])c([H])c([H])c1[H]"/>
36 <brsynth:inchi value="InChI=1S/C9H11NO2/c10-8(9(11)12)6-7-4-2-1-3-5-7/h1-5,8H,6,10H2,(H,11,12)"/>
37 <brsynth:inchikey value="COLNVLDHVKWLRT-UHFFFAOYSA-N"/>
38 <brsynth:fba_biomass_shadow_price>
39 <brsynth:value value="None"/>
40 </brsynth:fba_biomass_shadow_price>
41 <brsynth:fba_fraction_shadow_price>
42 <brsynth:value value="None"/>
43 </brsynth:fba_fraction_shadow_price>
44 <brsynth:thermo_standard_dg_formation>
45 <brsynth:value value="-207.07052002003908"/>
46 <brsynth:units value="kilojoule / mole"/>
47 </brsynth:thermo_standard_dg_formation>
48 </brsynth:brsynth>
49 </rdf:BRSynth>
50 </rdf:RDF>
51 </annotation>
52 </species>
53 <species metaid="_70815415d0cc5bdb32d594ff385cc7e2e02e73da1f5099a321b65aa158a4cf7b" id="MNXM15" name="MNXM15" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
54 <annotation>
55 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
56 <rdf:Description rdf:about="#_70815415d0cc5bdb32d594ff385cc7e2e02e73da1f5099a321b65aa158a4cf7b">
57 <bqbiol:is>
58 <rdf:Bag/>
59 </bqbiol:is>
60 </rdf:Description>
61 <rdf:BRSynth rdf:about="#_70815415d0cc5bdb32d594ff385cc7e2e02e73da1f5099a321b65aa158a4cf7b">
62 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
63 <brsynth:smiles value="N"/>
64 <brsynth:inchi value="InChI=1S/H3N/h1H3"/>
65 <brsynth:inchikey value="QGZKDVFQNNGYKY-UHFFFAOYSA-N"/>
66 <brsynth:fba_biomass_shadow_price>
67 <brsynth:value value="None"/>
68 </brsynth:fba_biomass_shadow_price>
69 <brsynth:fba_fraction_shadow_price>
70 <brsynth:value value="None"/>
71 </brsynth:fba_fraction_shadow_price>
72 <brsynth:thermo_standard_dg_formation>
73 <brsynth:value value="-81.91776181003092"/>
74 <brsynth:units value="kilojoule / mole"/>
75 </brsynth:thermo_standard_dg_formation>
76 </brsynth:brsynth>
77 </rdf:BRSynth>
78 </rdf:RDF>
79 </annotation>
80 </species>
81 <species metaid="_6817bb5f7133f50744b232330f1f3009343f785b8f77602ce5f44cdd9458f002" id="TARGET_0000000001" name="TARGET_0000000001" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
82 <annotation>
83 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
84 <rdf:Description rdf:about="#_6817bb5f7133f50744b232330f1f3009343f785b8f77602ce5f44cdd9458f002">
85 <bqbiol:is>
86 <rdf:Bag/>
87 </bqbiol:is>
88 </rdf:Description>
89 <rdf:BRSynth rdf:about="#_6817bb5f7133f50744b232330f1f3009343f785b8f77602ce5f44cdd9458f002">
90 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
91 <brsynth:smiles value="[H]C([H])=C([H])c1c([H])c([H])c([H])c([H])c1[H]"/>
92 <brsynth:inchi value="InChI=1S/C8H8/c1-2-8-6-4-3-5-7-8/h2-7H,1H2"/>
93 <brsynth:inchikey value="PPBRXRYQALVLMV-UHFFFAOYSA-N"/>
94 <brsynth:fba_biomass_shadow_price>
95 <brsynth:value value="-0.0"/>
96 </brsynth:fba_biomass_shadow_price>
97 <brsynth:fba_fraction_shadow_price>
98 <brsynth:value value="-1.0"/>
99 </brsynth:fba_fraction_shadow_price>
100 <brsynth:thermo_standard_dg_formation>
101 <brsynth:value value="208.92559504464236"/>
102 <brsynth:units value="kilojoule / mole"/>
103 </brsynth:thermo_standard_dg_formation>
104 </brsynth:brsynth>
105 </rdf:BRSynth>
106 </rdf:RDF>
107 </annotation>
108 </species>
109 <species metaid="ada4d198af79d26a0eb691008fc79b883e3ee4d3ef8ce39c18214444cc981f25" id="MNXM1" name="MNXM1" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
110 <annotation>
111 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
112 <rdf:Description rdf:about="#ada4d198af79d26a0eb691008fc79b883e3ee4d3ef8ce39c18214444cc981f25">
113 <bqbiol:is>
114 <rdf:Bag/>
115 </bqbiol:is>
116 </rdf:Description>
117 <rdf:BRSynth rdf:about="#ada4d198af79d26a0eb691008fc79b883e3ee4d3ef8ce39c18214444cc981f25">
118 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
119 <brsynth:smiles value="[H+]"/>
120 <brsynth:inchi value="InChI=1S/p+1"/>
121 <brsynth:inchikey value="GPRLSGONYQIRFK-UHFFFAOYSA-N"/>
122 <brsynth:fba_biomass_shadow_price>
123 <brsynth:value value="None"/>
124 </brsynth:fba_biomass_shadow_price>
125 <brsynth:fba_fraction_shadow_price>
126 <brsynth:value value="None"/>
127 </brsynth:fba_fraction_shadow_price>
128 <brsynth:thermo_standard_dg_formation>
129 <brsynth:value value="NaN"/>
130 <brsynth:units value="kilojoule / mole"/>
131 </brsynth:thermo_standard_dg_formation>
132 </brsynth:brsynth>
133 </rdf:BRSynth>
134 </rdf:RDF>
135 </annotation>
136 </species>
137 <species metaid="_7d22781170c09f66099e3d92f82fe456ce2c3f02d9162656e7ca49a0cc9c7b16" id="CMPD_0000000002" name="CMPD_0000000002" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
138 <annotation>
139 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
140 <rdf:Description rdf:about="#_7d22781170c09f66099e3d92f82fe456ce2c3f02d9162656e7ca49a0cc9c7b16">
141 <bqbiol:is>
142 <rdf:Bag/>
143 </bqbiol:is>
144 </rdf:Description>
145 <rdf:BRSynth rdf:about="#_7d22781170c09f66099e3d92f82fe456ce2c3f02d9162656e7ca49a0cc9c7b16">
146 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
147 <brsynth:smiles value="[H]OC(=O)C([H])=C([H])c1c([H])c([H])c([H])c([H])c1[H]"/>
148 <brsynth:inchi value="InChI=1S/C9H8O2/c10-9(11)7-6-8-4-2-1-3-5-8/h1-7H,(H,10,11)"/>
149 <brsynth:inchikey value="WBYWAXJHAXSJNI-UHFFFAOYSA-N"/>
150 <brsynth:fba_biomass_shadow_price>
151 <brsynth:value value="-0.0009404190769783985"/>
152 </brsynth:fba_biomass_shadow_price>
153 <brsynth:fba_fraction_shadow_price>
154 <brsynth:value value="-1.0057339449541285"/>
155 </brsynth:fba_fraction_shadow_price>
156 <brsynth:thermo_standard_dg_formation>
157 <brsynth:value value="-127.1962856224608"/>
158 <brsynth:units value="kilojoule / mole"/>
159 </brsynth:thermo_standard_dg_formation>
160 </brsynth:brsynth>
161 </rdf:BRSynth>
162 </rdf:RDF>
163 </annotation>
164 </species>
22 <species metaid="_2a301e4e848a79652a3993832c9d968953ade64ccc71ea0ef1c47184f60ec251" id="MNXM13" name="MNXM13" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"> 165 <species metaid="_2a301e4e848a79652a3993832c9d968953ade64ccc71ea0ef1c47184f60ec251" id="MNXM13" name="MNXM13" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
23 <annotation> 166 <annotation>
24 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> 167 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
25 <rdf:Description rdf:about="#_2a301e4e848a79652a3993832c9d968953ade64ccc71ea0ef1c47184f60ec251"> 168 <rdf:Description rdf:about="#_2a301e4e848a79652a3993832c9d968953ade64ccc71ea0ef1c47184f60ec251">
26 <bqbiol:is> 169 <bqbiol:is>
30 <rdf:BRSynth rdf:about="#_2a301e4e848a79652a3993832c9d968953ade64ccc71ea0ef1c47184f60ec251"> 173 <rdf:BRSynth rdf:about="#_2a301e4e848a79652a3993832c9d968953ade64ccc71ea0ef1c47184f60ec251">
31 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"> 174 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
32 <brsynth:smiles value="O=C=O"/> 175 <brsynth:smiles value="O=C=O"/>
33 <brsynth:inchi value="InChI=1S/CO2/c2-1-3"/> 176 <brsynth:inchi value="InChI=1S/CO2/c2-1-3"/>
34 <brsynth:inchikey value="CURLTUGMZLYLDI-UHFFFAOYSA-N"/> 177 <brsynth:inchikey value="CURLTUGMZLYLDI-UHFFFAOYSA-N"/>
35 </brsynth:brsynth> 178 <brsynth:fba_biomass_shadow_price>
36 </rdf:BRSynth> 179 <brsynth:value value="None"/>
37 </rdf:RDF> 180 </brsynth:fba_biomass_shadow_price>
38 </annotation> 181 <brsynth:fba_fraction_shadow_price>
39 </species> 182 <brsynth:value value="None"/>
40 <species metaid="_7d22781170c09f66099e3d92f82fe456ce2c3f02d9162656e7ca49a0cc9c7b16" id="CMPD_0000000002" name="CMPD_0000000002" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false"> 183 </brsynth:fba_fraction_shadow_price>
41 <annotation> 184 <brsynth:thermo_standard_dg_formation>
42 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> 185 <brsynth:value value="-386.0000000000019"/>
43 <rdf:Description rdf:about="#_7d22781170c09f66099e3d92f82fe456ce2c3f02d9162656e7ca49a0cc9c7b16"> 186 <brsynth:units value="kilojoule / mole"/>
44 <bqbiol:is> 187 </brsynth:thermo_standard_dg_formation>
45 <rdf:Bag/>
46 </bqbiol:is>
47 </rdf:Description>
48 <rdf:BRSynth rdf:about="#_7d22781170c09f66099e3d92f82fe456ce2c3f02d9162656e7ca49a0cc9c7b16">
49 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
50 <brsynth:smiles value="[H]OC(=O)C([H])=C([H])c1c([H])c([H])c([H])c([H])c1[H]"/>
51 <brsynth:inchi value="InChI=1S/C9H8O2/c10-9(11)7-6-8-4-2-1-3-5-8/h1-7H,(H,10,11)"/>
52 <brsynth:inchikey value="WBYWAXJHAXSJNI-UHFFFAOYSA-N"/>
53 </brsynth:brsynth>
54 </rdf:BRSynth>
55 </rdf:RDF>
56 </annotation>
57 </species>
58 <species metaid="_70815415d0cc5bdb32d594ff385cc7e2e02e73da1f5099a321b65aa158a4cf7b" id="MNXM15" name="MNXM15" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
59 <annotation>
60 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
61 <rdf:Description rdf:about="#_70815415d0cc5bdb32d594ff385cc7e2e02e73da1f5099a321b65aa158a4cf7b">
62 <bqbiol:is>
63 <rdf:Bag/>
64 </bqbiol:is>
65 </rdf:Description>
66 <rdf:BRSynth rdf:about="#_70815415d0cc5bdb32d594ff385cc7e2e02e73da1f5099a321b65aa158a4cf7b">
67 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
68 <brsynth:smiles value="N"/>
69 <brsynth:inchi value="InChI=1S/H3N/h1H3"/>
70 <brsynth:inchikey value="QGZKDVFQNNGYKY-UHFFFAOYSA-N"/>
71 </brsynth:brsynth>
72 </rdf:BRSynth>
73 </rdf:RDF>
74 </annotation>
75 </species>
76 <species metaid="fc3a2e5cd1a81a37f4065ad4b53b9e5009ace624c22100af7e69653ca4a2eae9" id="MNXM97" name="MNXM97" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
77 <annotation>
78 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
79 <rdf:Description rdf:about="#fc3a2e5cd1a81a37f4065ad4b53b9e5009ace624c22100af7e69653ca4a2eae9">
80 <bqbiol:is>
81 <rdf:Bag/>
82 </bqbiol:is>
83 </rdf:Description>
84 <rdf:BRSynth rdf:about="#fc3a2e5cd1a81a37f4065ad4b53b9e5009ace624c22100af7e69653ca4a2eae9">
85 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
86 <brsynth:smiles value="[H]OC(=O)C([H])(N([H])[H])C([H])([H])c1c([H])c([H])c([H])c([H])c1[H]"/>
87 <brsynth:inchi value="InChI=1S/C9H11NO2/c10-8(9(11)12)6-7-4-2-1-3-5-7/h1-5,8H,6,10H2,(H,11,12)"/>
88 <brsynth:inchikey value="COLNVLDHVKWLRT-UHFFFAOYSA-N"/>
89 </brsynth:brsynth>
90 </rdf:BRSynth>
91 </rdf:RDF>
92 </annotation>
93 </species>
94 <species metaid="ada4d198af79d26a0eb691008fc79b883e3ee4d3ef8ce39c18214444cc981f25" id="MNXM1" name="MNXM1" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
95 <annotation>
96 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
97 <rdf:Description rdf:about="#ada4d198af79d26a0eb691008fc79b883e3ee4d3ef8ce39c18214444cc981f25">
98 <bqbiol:is>
99 <rdf:Bag/>
100 </bqbiol:is>
101 </rdf:Description>
102 <rdf:BRSynth rdf:about="#ada4d198af79d26a0eb691008fc79b883e3ee4d3ef8ce39c18214444cc981f25">
103 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
104 <brsynth:smiles value="[H+]"/>
105 <brsynth:inchi value="InChI=1S/p+1"/>
106 <brsynth:inchikey value="GPRLSGONYQIRFK-UHFFFAOYSA-N"/>
107 </brsynth:brsynth>
108 </rdf:BRSynth>
109 </rdf:RDF>
110 </annotation>
111 </species>
112 <species metaid="_6817bb5f7133f50744b232330f1f3009343f785b8f77602ce5f44cdd9458f002" id="TARGET_0000000001" name="TARGET_0000000001" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
113 <annotation>
114 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
115 <rdf:Description rdf:about="#_6817bb5f7133f50744b232330f1f3009343f785b8f77602ce5f44cdd9458f002">
116 <bqbiol:is>
117 <rdf:Bag/>
118 </bqbiol:is>
119 </rdf:Description>
120 <rdf:BRSynth rdf:about="#_6817bb5f7133f50744b232330f1f3009343f785b8f77602ce5f44cdd9458f002">
121 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
122 <brsynth:smiles value="[H]C([H])=C([H])c1c([H])c([H])c([H])c([H])c1[H]"/>
123 <brsynth:inchi value="InChI=1S/C8H8/c1-2-8-6-4-3-5-7-8/h2-7H,1H2"/>
124 <brsynth:inchikey value="PPBRXRYQALVLMV-UHFFFAOYSA-N"/>
125 </brsynth:brsynth> 188 </brsynth:brsynth>
126 </rdf:BRSynth> 189 </rdf:BRSynth>
127 </rdf:RDF> 190 </rdf:RDF>
128 </annotation> 191 </annotation>
129 </species> 192 </species>
136 <reaction metaid="_7af1776cbbaecbf874d7f576d21891f6ad79e3b7c2e726cfd2ee9f5bd6f483c4" sboTerm="SBO:0000176" id="rxn_1" reversible="false" fast="false" fbc:lowerFluxBound="BRS_FBC_0_0" fbc:upperFluxBound="BRS_FBC_10000_0"> 199 <reaction metaid="_7af1776cbbaecbf874d7f576d21891f6ad79e3b7c2e726cfd2ee9f5bd6f483c4" sboTerm="SBO:0000176" id="rxn_1" reversible="false" fast="false" fbc:lowerFluxBound="BRS_FBC_0_0" fbc:upperFluxBound="BRS_FBC_10000_0">
137 <annotation> 200 <annotation>
138 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> 201 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
139 <rdf:Description rdf:about="#_7af1776cbbaecbf874d7f576d21891f6ad79e3b7c2e726cfd2ee9f5bd6f483c4"> 202 <rdf:Description rdf:about="#_7af1776cbbaecbf874d7f576d21891f6ad79e3b7c2e726cfd2ee9f5bd6f483c4">
140 <bqbiol:is> 203 <bqbiol:is>
141 <rdf:Bag/> 204 <rdf:Bag>
205 <rdf:li rdf:resource="http://identifiers.org/ec-code/4.3.1.24"/>
206 <rdf:li rdf:resource="http://identifiers.org/ec-code/4.3.1.25"/>
207 </rdf:Bag>
142 </bqbiol:is> 208 </bqbiol:is>
143 </rdf:Description> 209 </rdf:Description>
144 <rdf:BRSynth rdf:about="#_7af1776cbbaecbf874d7f576d21891f6ad79e3b7c2e726cfd2ee9f5bd6f483c4"> 210 <rdf:BRSynth rdf:about="#_7af1776cbbaecbf874d7f576d21891f6ad79e3b7c2e726cfd2ee9f5bd6f483c4">
145 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"> 211 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
146 <brsynth:smiles value="[H]OC(=O)C([H])(N([H])[H])C([H])([H])c1c([H])c([H])c([H])c([H])c1[H]&gt;&gt;[H]OC(=O)C([H])=C([H])c1c([H])c([H])c([H])c([H])c1[H].N"/> 212 <brsynth:smiles value="[H]OC(=O)C([H])(N([H])[H])C([H])([H])c1c([H])c([H])c([H])c([H])c1[H]&gt;&gt;[H]OC(=O)C([H])=C([H])c1c([H])c([H])c([H])c([H])c1[H].N"/>
195 <reaction metaid="c9c2d56fd0ad9d5b8cd80acad4b5df22945ab4de50db7b24db52a91a7560c3ff" sboTerm="SBO:0000176" id="rxn_2" reversible="false" fast="false" fbc:lowerFluxBound="BRS_FBC_0_0" fbc:upperFluxBound="BRS_FBC_10000_0"> 261 <reaction metaid="c9c2d56fd0ad9d5b8cd80acad4b5df22945ab4de50db7b24db52a91a7560c3ff" sboTerm="SBO:0000176" id="rxn_2" reversible="false" fast="false" fbc:lowerFluxBound="BRS_FBC_0_0" fbc:upperFluxBound="BRS_FBC_10000_0">
196 <annotation> 262 <annotation>
197 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> 263 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
198 <rdf:Description rdf:about="#c9c2d56fd0ad9d5b8cd80acad4b5df22945ab4de50db7b24db52a91a7560c3ff"> 264 <rdf:Description rdf:about="#c9c2d56fd0ad9d5b8cd80acad4b5df22945ab4de50db7b24db52a91a7560c3ff">
199 <bqbiol:is> 265 <bqbiol:is>
200 <rdf:Bag/> 266 <rdf:Bag>
267 <rdf:li rdf:resource="http://identifiers.org/ec-code/4.1.1.102"/>
268 </rdf:Bag>
201 </bqbiol:is> 269 </bqbiol:is>
202 </rdf:Description> 270 </rdf:Description>
203 <rdf:BRSynth rdf:about="#c9c2d56fd0ad9d5b8cd80acad4b5df22945ab4de50db7b24db52a91a7560c3ff"> 271 <rdf:BRSynth rdf:about="#c9c2d56fd0ad9d5b8cd80acad4b5df22945ab4de50db7b24db52a91a7560c3ff">
204 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"> 272 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
205 <brsynth:smiles value="[H]OC(=O)C([H])=C([H])c1c([H])c([H])c([H])c([H])c1[H].[H+]&gt;&gt;O=C=O.[H]C([H])=C([H])c1c([H])c([H])c([H])c([H])c1[H]"/> 273 <brsynth:smiles value="[H]OC(=O)C([H])=C([H])c1c([H])c([H])c([H])c([H])c1[H].[H+]&gt;&gt;O=C=O.[H]C([H])=C([H])c1c([H])c([H])c([H])c([H])c1[H]"/>
315 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/> 383 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/>
316 </rdf:BRSynth> 384 </rdf:BRSynth>
317 </rdf:RDF> 385 </rdf:RDF>
318 </annotation> 386 </annotation>
319 <groups:listOfMembers> 387 <groups:listOfMembers>
388 <groups:member groups:idRef="TARGET_0000000001"/>
389 <groups:member groups:idRef="MNXM97"/>
320 <groups:member groups:idRef="CMPD_0000000002"/> 390 <groups:member groups:idRef="CMPD_0000000002"/>
321 <groups:member groups:idRef="MNXM97"/>
322 <groups:member groups:idRef="TARGET_0000000001"/>
323 </groups:listOfMembers> 391 </groups:listOfMembers>
324 </groups:group> 392 </groups:group>
325 <groups:group metaid="_9e3154173c97366b3980dd1642e1e35d0bdfc3274abc744e89ecb518bcd48378" groups:id="rp_completed_species" groups:kind="collection"> 393 <groups:group metaid="_9e3154173c97366b3980dd1642e1e35d0bdfc3274abc744e89ecb518bcd48378" groups:id="rp_completed_species" groups:kind="collection">
326 <annotation> 394 <annotation>
327 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> 395 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
330 </rdf:BRSynth> 398 </rdf:BRSynth>
331 </rdf:RDF> 399 </rdf:RDF>
332 </annotation> 400 </annotation>
333 <groups:listOfMembers> 401 <groups:listOfMembers>
334 <groups:member groups:idRef="MNXM13"/> 402 <groups:member groups:idRef="MNXM13"/>
403 <groups:member groups:idRef="MNXM1"/>
335 <groups:member groups:idRef="MNXM15"/> 404 <groups:member groups:idRef="MNXM15"/>
336 <groups:member groups:idRef="MNXM1"/>
337 </groups:listOfMembers> 405 </groups:listOfMembers>
338 </groups:group> 406 </groups:group>
339 <groups:group metaid="_58b3b59284e0d918d6d3f3bcadc2d757726da7594cd899cad4e745836ac967a3" groups:id="rp_sink_species" groups:kind="collection"> 407 <groups:group metaid="_58b3b59284e0d918d6d3f3bcadc2d757726da7594cd899cad4e745836ac967a3" groups:id="rp_sink_species" groups:kind="collection">
340 <annotation> 408 <annotation>
341 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> 409 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
344 </rdf:BRSynth> 412 </rdf:BRSynth>
345 </rdf:RDF> 413 </rdf:RDF>
346 </annotation> 414 </annotation>
347 <groups:listOfMembers> 415 <groups:listOfMembers>
348 <groups:member groups:idRef="MNXM13"/> 416 <groups:member groups:idRef="MNXM13"/>
349 <groups:member groups:idRef="MNXM15"/>
350 <groups:member groups:idRef="MNXM1"/> 417 <groups:member groups:idRef="MNXM1"/>
351 <groups:member groups:idRef="MNXM97"/> 418 <groups:member groups:idRef="MNXM97"/>
419 <groups:member groups:idRef="MNXM15"/>
352 </groups:listOfMembers> 420 </groups:listOfMembers>
353 </groups:group> 421 </groups:group>
354 <groups:group metaid="a0f48a6fe4f833a3d15abd7ee5b944b97d629570ac09588e9fb6fdf6196ab189" groups:id="rp_fba_ignored_species" groups:kind="collection"> 422 <groups:group metaid="a0f48a6fe4f833a3d15abd7ee5b944b97d629570ac09588e9fb6fdf6196ab189" groups:id="rp_fba_ignored_species" groups:kind="collection">
355 <annotation> 423 <annotation>
356 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> 424 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">