Mercurial > repos > tduigou > rptools_rpviz

comparison test-data/rp_003_0001.xml @ 0:bf6f117ef632 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 3bc34bfc82850daa2229724c396dcd9454039273-dirty
author tduigou
date Wed, 16 Nov 2022 11:11:25 +0000
parents
children
comparison
equal deleted inserted replaced
-1:000000000000 0:bf6f117ef632
1 <?xml version="1.0" encoding="UTF-8"?>
2 <sbml xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:groups="http://www.sbml.org/sbml/level3/version1/groups/version1" xmlns:fbc="http://www.sbml.org/sbml/level3/version1/fbc/version2" level="3" version="1" groups:required="false" fbc:required="false">
3 <model metaid="d4bfc4fec7c42e9de20c2ade1a21933a8c1ca015d4ca77b2b5f95790e798931c" id="RP_model_003_0001" name="003_0001" substanceUnits="mole" timeUnits="second" extentUnits="mole" fbc:strict="true">
4 <listOfCompartments>
5 <compartment metaid="_2e7d2c03a9507ae265ecf5b5356885a53393a2029d241394997265a1a25aefc6" sboTerm="SBO:0000290" id="c" name="cytosol" size="1" constant="true">
6 <annotation>
7 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
8 <rdf:Description rdf:about="#_2e7d2c03a9507ae265ecf5b5356885a53393a2029d241394997265a1a25aefc6">
9 <bqbiol:is>
10 <rdf:Bag>
11 <rdf:li rdf:resource="http://identifiers.org/bigg.compartment/c"/>
12 <rdf:li rdf:resource="http://identifiers.org/bigg.compartment/c_c"/>
13 <rdf:li rdf:resource="http://identifiers.org/metanetx.compartment/MNXC3"/>
14 <rdf:li rdf:resource="http://identifiers.org/seed/c"/>
15 <rdf:li rdf:resource="http://identifiers.org/seed/c0"/>
16 <rdf:li rdf:resource="http://identifiers.org/seed/cytosol"/>
17 <rdf:li rdf:resource="http://identifiers.org/name/cytosol"/>
18 </rdf:Bag>
19 </bqbiol:is>
20 </rdf:Description>
21 </rdf:RDF>
22 </annotation>
23 </compartment>
24 </listOfCompartments>
25 <listOfSpecies>
26 <species metaid="a6e267be12defb7184259624f5adc519108c6c6adfe6be13f64b649567cb6df1" id="MNXM11" name="MNXM11" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
27 <annotation>
28 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
29 <rdf:Description rdf:about="#a6e267be12defb7184259624f5adc519108c6c6adfe6be13f64b649567cb6df1">
30 <bqbiol:is>
31 <rdf:Bag/>
32 </bqbiol:is>
33 </rdf:Description>
34 <rdf:BRSynth rdf:about="#a6e267be12defb7184259624f5adc519108c6c6adfe6be13f64b649567cb6df1">
35 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
36 <brsynth:smiles value="O=P(O)(O)OP(=O)(O)O"/>
37 <brsynth:inchi value="InChI=1S/H4O7P2/c1-8(2,3)7-9(4,5)6/h(H2,1,2,3)(H2,4,5,6)"/>
38 <brsynth:inchikey value="XPPKVPWEQAFLFU-UHFFFAOYSA-N"/>
39 <brsynth:fba_biomass_shadow_price>
40 <brsynth:value value="None"/>
41 </brsynth:fba_biomass_shadow_price>
42 <brsynth:fba_fraction_shadow_price>
43 <brsynth:value value="None"/>
44 </brsynth:fba_fraction_shadow_price>
45 <brsynth:thermo_standard_dg_formation>
46 <brsynth:value value="-1966.8036657706114"/>
47 <brsynth:units value="kilojoule / mole"/>
48 </brsynth:thermo_standard_dg_formation>
49 </brsynth:brsynth>
50 </rdf:BRSynth>
51 </rdf:RDF>
52 </annotation>
53 </species>
54 <species metaid="_6817bb5f7133f50744b232330f1f3009343f785b8f77602ce5f44cdd9458f002" id="TARGET_0000000001" name="TARGET_0000000001" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
55 <annotation>
56 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
57 <rdf:Description rdf:about="#_6817bb5f7133f50744b232330f1f3009343f785b8f77602ce5f44cdd9458f002">
58 <bqbiol:is>
59 <rdf:Bag/>
60 </bqbiol:is>
61 </rdf:Description>
62 <rdf:BRSynth rdf:about="#_6817bb5f7133f50744b232330f1f3009343f785b8f77602ce5f44cdd9458f002">
63 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
64 <brsynth:smiles value="[H]C(=C([H])C([H])=C(C([H])=C([H])C([H])=C(C([H])=C([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H])C([H])([H])[H])C([H])([H])[H])C([H])=C(C([H])=C([H])C([H])=C(C([H])=C([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H])C([H])([H])[H])C([H])([H])[H]"/>
65 <brsynth:inchi value="InChI=1S/C40H56/c1-33(2)19-13-23-37(7)27-17-31-39(9)29-15-25-35(5)21-11-12-22-36(6)26-16-30-40(10)32-18-28-38(8)24-14-20-34(3)4/h11-12,15-22,25-32H,13-14,23-24H2,1-10H3"/>
66 <brsynth:inchikey value="OAIJSZIZWZSQBC-UHFFFAOYSA-N"/>
67 <brsynth:fba_biomass_shadow_price>
68 <brsynth:value value="-0.46174576679639245"/>
69 </brsynth:fba_biomass_shadow_price>
70 <brsynth:fba_fraction_shadow_price>
71 <brsynth:value value="-1.0"/>
72 </brsynth:fba_fraction_shadow_price>
73 <brsynth:thermo_standard_dg_formation>
74 <brsynth:value value="1245.5794452419402"/>
75 <brsynth:units value="kilojoule / mole"/>
76 </brsynth:thermo_standard_dg_formation>
77 </brsynth:brsynth>
78 </rdf:BRSynth>
79 </rdf:RDF>
80 </annotation>
81 </species>
82 <species metaid="_2c27bb432be6149f648dcec0e702fd9bdf6449fb9f730bd86eeb0b63b93d8858" id="CMPD_0000000003" name="CMPD_0000000003" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
83 <annotation>
84 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
85 <rdf:Description rdf:about="#_2c27bb432be6149f648dcec0e702fd9bdf6449fb9f730bd86eeb0b63b93d8858">
86 <bqbiol:is>
87 <rdf:Bag/>
88 </bqbiol:is>
89 </rdf:Description>
90 <rdf:BRSynth rdf:about="#_2c27bb432be6149f648dcec0e702fd9bdf6449fb9f730bd86eeb0b63b93d8858">
91 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
92 <brsynth:smiles value="[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H]"/>
93 <brsynth:inchi value="InChI=1S/C20H36O7P2/c1-17(2)9-6-10-18(3)11-7-12-19(4)13-8-14-20(5)15-16-26-29(24,25)27-28(21,22)23/h9,11,13,15H,6-8,10,12,14,16H2,1-5H3,(H,24,25)(H2,21,22,23)"/>
94 <brsynth:inchikey value="OINNEUNVOZHBOX-UHFFFAOYSA-N"/>
95 <brsynth:fba_biomass_shadow_price>
96 <brsynth:value value="-0.4636266049503492"/>
97 </brsynth:fba_biomass_shadow_price>
98 <brsynth:fba_fraction_shadow_price>
99 <brsynth:value value="-0.9959432048681541"/>
100 </brsynth:fba_fraction_shadow_price>
101 <brsynth:thermo_standard_dg_formation>
102 <brsynth:value value="-1495.8281099920857"/>
103 <brsynth:units value="kilojoule / mole"/>
104 </brsynth:thermo_standard_dg_formation>
105 </brsynth:brsynth>
106 </rdf:BRSynth>
107 </rdf:RDF>
108 </annotation>
109 </species>
110 <species metaid="_47d72a86d31940edf1cc42c7a7361a7a96211dc2a6679326b8ad27a7e216ada0" id="MNXM83" name="MNXM83" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
111 <annotation>
112 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
113 <rdf:Description rdf:about="#_47d72a86d31940edf1cc42c7a7361a7a96211dc2a6679326b8ad27a7e216ada0">
114 <bqbiol:is>
115 <rdf:Bag/>
116 </bqbiol:is>
117 </rdf:Description>
118 <rdf:BRSynth rdf:about="#_47d72a86d31940edf1cc42c7a7361a7a96211dc2a6679326b8ad27a7e216ada0">
119 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
120 <brsynth:smiles value="[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])([H])C(=C([H])[H])C([H])([H])[H]"/>
121 <brsynth:inchi value="InChI=1S/C5H12O7P2/c1-5(2)3-4-11-14(9,10)12-13(6,7)8/h1,3-4H2,2H3,(H,9,10)(H2,6,7,8)"/>
122 <brsynth:inchikey value="NUHSROFQTUXZQQ-UHFFFAOYSA-N"/>
123 <brsynth:fba_biomass_shadow_price>
124 <brsynth:value value="None"/>
125 </brsynth:fba_biomass_shadow_price>
126 <brsynth:fba_fraction_shadow_price>
127 <brsynth:value value="None"/>
128 </brsynth:fba_fraction_shadow_price>
129 <brsynth:thermo_standard_dg_formation>
130 <brsynth:value value="-1828.3274439664424"/>
131 <brsynth:units value="kilojoule / mole"/>
132 </brsynth:thermo_standard_dg_formation>
133 </brsynth:brsynth>
134 </rdf:BRSynth>
135 </rdf:RDF>
136 </annotation>
137 </species>
138 <species metaid="_10a025d408ecc91b5894e1d66d8a31d96e4ac530a63de61f99720be74086a29f" id="MNXM34" name="MNXM34" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
139 <annotation>
140 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
141 <rdf:Description rdf:about="#_10a025d408ecc91b5894e1d66d8a31d96e4ac530a63de61f99720be74086a29f">
142 <bqbiol:is>
143 <rdf:Bag/>
144 </bqbiol:is>
145 </rdf:Description>
146 <rdf:BRSynth rdf:about="#_10a025d408ecc91b5894e1d66d8a31d96e4ac530a63de61f99720be74086a29f">
147 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
148 <brsynth:smiles value="[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H]"/>
149 <brsynth:inchi value="InChI=1S/C15H28O7P2/c1-13(2)7-5-8-14(3)9-6-10-15(4)11-12-21-24(19,20)22-23(16,17)18/h7,9,11H,5-6,8,10,12H2,1-4H3,(H,19,20)(H2,16,17,18)"/>
150 <brsynth:inchikey value="VWFJDQUYCIWHTN-UHFFFAOYSA-N"/>
151 <brsynth:fba_biomass_shadow_price>
152 <brsynth:value value="None"/>
153 </brsynth:fba_biomass_shadow_price>
154 <brsynth:fba_fraction_shadow_price>
155 <brsynth:value value="None"/>
156 </brsynth:fba_fraction_shadow_price>
157 <brsynth:thermo_standard_dg_formation>
158 <brsynth:value value="-1607.8991259717538"/>
159 <brsynth:units value="kilojoule / mole"/>
160 </brsynth:thermo_standard_dg_formation>
161 </brsynth:brsynth>
162 </rdf:BRSynth>
163 </rdf:RDF>
164 </annotation>
165 </species>
166 <species metaid="_2f4b2d21d00b43a266620e821de533b08c3e42ff09ca008f915ca4400eb7d8c4" id="MNXM8975" name="MNXM8975" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
167 <annotation>
168 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
169 <rdf:Description rdf:about="#_2f4b2d21d00b43a266620e821de533b08c3e42ff09ca008f915ca4400eb7d8c4">
170 <bqbiol:is>
171 <rdf:Bag/>
172 </bqbiol:is>
173 </rdf:Description>
174 <rdf:BRSynth rdf:about="#_2f4b2d21d00b43a266620e821de533b08c3e42ff09ca008f915ca4400eb7d8c4">
175 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
176 <brsynth:smiles/>
177 <brsynth:inchi/>
178 <brsynth:inchikey/>
179 <brsynth:fba_biomass_shadow_price>
180 <brsynth:value value="None"/>
181 </brsynth:fba_biomass_shadow_price>
182 <brsynth:fba_fraction_shadow_price>
183 <brsynth:value value="None"/>
184 </brsynth:fba_fraction_shadow_price>
185 <brsynth:thermo_standard_dg_formation>
186 <brsynth:value value="-2261.3806478863044"/>
187 <brsynth:units value="kilojoule / mole"/>
188 </brsynth:thermo_standard_dg_formation>
189 </brsynth:brsynth>
190 </rdf:BRSynth>
191 </rdf:RDF>
192 </annotation>
193 </species>
194 <species metaid="b0098569a07f786a6e9b2294639668cd4ee564dd642a38bdf429c4c6bb560b46" id="CMPD_0000000001" name="CMPD_0000000001" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
195 <annotation>
196 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
197 <rdf:Description rdf:about="#b0098569a07f786a6e9b2294639668cd4ee564dd642a38bdf429c4c6bb560b46">
198 <bqbiol:is>
199 <rdf:Bag/>
200 </bqbiol:is>
201 </rdf:Description>
202 <rdf:BRSynth rdf:about="#b0098569a07f786a6e9b2294639668cd4ee564dd642a38bdf429c4c6bb560b46">
203 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
204 <brsynth:smiles value="[H]C(=C([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H]"/>
205 <brsynth:inchi value="InChI=1S/C40H64/c1-33(2)19-13-23-37(7)27-17-31-39(9)29-15-25-35(5)21-11-12-22-36(6)26-16-30-40(10)32-18-28-38(8)24-14-20-34(3)4/h11-12,19-22,27-30H,13-18,23-26,31-32H2,1-10H3"/>
206 <brsynth:inchikey value="YVLPJIGOMTXXLP-UHFFFAOYSA-N"/>
207 <brsynth:fba_biomass_shadow_price>
208 <brsynth:value value="-0.46174576679639245"/>
209 </brsynth:fba_biomass_shadow_price>
210 <brsynth:fba_fraction_shadow_price>
211 <brsynth:value value="-1.0"/>
212 </brsynth:fba_fraction_shadow_price>
213 <brsynth:thermo_standard_dg_formation>
214 <brsynth:value value="936.7141451846444"/>
215 <brsynth:units value="kilojoule / mole"/>
216 </brsynth:thermo_standard_dg_formation>
217 </brsynth:brsynth>
218 </rdf:BRSynth>
219 </rdf:RDF>
220 </annotation>
221 </species>
222 <species metaid="_61841f05183ff06dbe77a0e01f6d73d7a890997d823ac18d9fd56bac3d4bcc39" id="MNXM24" name="MNXM24" compartment="c" initialConcentration="1" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false">
223 <annotation>
224 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
225 <rdf:Description rdf:about="#_61841f05183ff06dbe77a0e01f6d73d7a890997d823ac18d9fd56bac3d4bcc39">
226 <bqbiol:is>
227 <rdf:Bag/>
228 </bqbiol:is>
229 </rdf:Description>
230 <rdf:BRSynth rdf:about="#_61841f05183ff06dbe77a0e01f6d73d7a890997d823ac18d9fd56bac3d4bcc39">
231 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
232 <brsynth:smiles/>
233 <brsynth:inchi/>
234 <brsynth:inchikey/>
235 <brsynth:fba_biomass_shadow_price>
236 <brsynth:value value="None"/>
237 </brsynth:fba_biomass_shadow_price>
238 <brsynth:fba_fraction_shadow_price>
239 <brsynth:value value="None"/>
240 </brsynth:fba_fraction_shadow_price>
241 <brsynth:thermo_standard_dg_formation>
242 <brsynth:value value="-2256.1898491337233"/>
243 <brsynth:units value="kilojoule / mole"/>
244 </brsynth:thermo_standard_dg_formation>
245 </brsynth:brsynth>
246 </rdf:BRSynth>
247 </rdf:RDF>
248 </annotation>
249 </species>
250 </listOfSpecies>
251 <listOfParameters>
252 <parameter metaid="dc937b59892604f5a86ac96936cd7ff09e25f18ae6b758e8014a24c7fa039e91" sboTerm="SBO:0000625" id="BRS_FBC_10000_0" value="10000" constant="true"/>
253 <parameter metaid="dc937b59892604f5a86ac96936cd7ff09e25f18ae6b758e8014a24c7fa039e91" sboTerm="SBO:0000625" id="BRS_FBC_0_0" value="0" constant="true"/>
254 </listOfParameters>
255 <listOfReactions>
256 <reaction metaid="_7af1776cbbaecbf874d7f576d21891f6ad79e3b7c2e726cfd2ee9f5bd6f483c4" sboTerm="SBO:0000176" id="rxn_1" reversible="false" fast="false" fbc:lowerFluxBound="BRS_FBC_0_0" fbc:upperFluxBound="BRS_FBC_10000_0">
257 <annotation>
258 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
259 <rdf:Description rdf:about="#_7af1776cbbaecbf874d7f576d21891f6ad79e3b7c2e726cfd2ee9f5bd6f483c4">
260 <bqbiol:is>
261 <rdf:Bag>
262 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.10"/>
263 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.68"/>
264 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.29"/>
265 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1"/>
266 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.-"/>
267 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.88"/>
268 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.81"/>
269 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.31"/>
270 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.84"/>
271 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.85"/>
272 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.92"/>
273 </rdf:Bag>
274 </bqbiol:is>
275 </rdf:Description>
276 <rdf:BRSynth rdf:about="#_7af1776cbbaecbf874d7f576d21891f6ad79e3b7c2e726cfd2ee9f5bd6f483c4">
277 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
278 <brsynth:smiles value="[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H].[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])([H])C(=C([H])[H])C([H])([H])[H]&gt;&gt;[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H].O=P(O)(O)OP(=O)(O)O"/>
279 <brsynth:rp2_transfo_id value="TRS_0_2_742"/>
280 <brsynth:rule_ids>
281 <brsynth:RR-02-07adee9ac9c42c7d-14-F/>
282 <brsynth:RR-02-1494429c7e6e0694-14-F/>
283 <brsynth:RR-02-1d50852f3f343682-14-F/>
284 <brsynth:RR-02-3bf131230c6b2bf2-14-F/>
285 <brsynth:RR-02-58d0f0d25e47b74a-14-F/>
286 <brsynth:RR-02-b3db29f084fc7a81-14-F/>
287 <brsynth:RR-02-f9759fe03c57b29f-14-F/>
288 </brsynth:rule_ids>
289 <brsynth:tmpl_rxn_ids>
290 <brsynth:MNXR100137/>
291 <brsynth:MNXR112247/>
292 <brsynth:MNXR116653/>
293 <brsynth:MNXR100621/>
294 <brsynth:MNXR99634/>
295 <brsynth:MNXR112069/>
296 <brsynth:MNXR99650/>
297 <brsynth:MNXR109677/>
298 <brsynth:MNXR113141/>
299 <brsynth:MNXR105052/>
300 <brsynth:MNXR109713/>
301 <brsynth:MNXR110950/>
302 <brsynth:MNXR110952/>
303 <brsynth:MNXR112246/>
304 <brsynth:MNXR112250/>
305 <brsynth:MNXR112251/>
306 <brsynth:MNXR112252/>
307 <brsynth:MNXR116656/>
308 <brsynth:MNXR117266/>
309 <brsynth:MNXR139515/>
310 <brsynth:MNXR139637/>
311 <brsynth:MNXR112249/>
312 <brsynth:MNXR116655/>
313 <brsynth:MNXR103150/>
314 <brsynth:MNXR112248/>
315 <brsynth:MNXR116654/>
316 </brsynth:tmpl_rxn_ids>
317 <brsynth:rule_score value="0.7358363677022237"/>
318 <brsynth:idx_in_path value="1"/>
319 <brsynth:selenzy/>
320 <brsynth:fba_biomass>
321 <brsynth:value value="0.0"/>
322 <brsynth:units value="gDW / gDW / hour"/>
323 </brsynth:fba_biomass>
324 <brsynth:fba_fraction>
325 <brsynth:value value="0.4741875610167627"/>
326 <brsynth:units value="milimole / gDW / hour"/>
327 </brsynth:fba_fraction>
328 <brsynth:thermo_dG0_prime>
329 <brsynth:value value="-71.55654770059041"/>
330 <brsynth:error value="2.9407032504945367"/>
331 <brsynth:units value="kilojoule / mole"/>
332 </brsynth:thermo_dG0_prime>
333 <brsynth:thermo_dGm_prime>
334 <brsynth:value value="-71.55654770059041"/>
335 <brsynth:error value="2.9407032504945367"/>
336 <brsynth:units value="kilojoule / mole"/>
337 </brsynth:thermo_dGm_prime>
338 <brsynth:thermo_dG_prime>
339 <brsynth:value value="-71.55654770059041"/>
340 <brsynth:error value="2.9407032504945367"/>
341 <brsynth:units value="kilojoule / mole"/>
342 </brsynth:thermo_dG_prime>
343 <brsynth:thermo_dG>
344 <brsynth:value value="-26.40520582450108"/>
345 <brsynth:error value="2.9407032504945367"/>
346 <brsynth:units value="kilojoule / mole"/>
347 </brsynth:thermo_dG>
348 </brsynth:brsynth>
349 </rdf:BRSynth>
350 </rdf:RDF>
351 </annotation>
352 <listOfReactants>
353 <speciesReference species="MNXM34" stoichiometry="1" constant="true"/>
354 <speciesReference species="MNXM83" stoichiometry="1" constant="true"/>
355 </listOfReactants>
356 <listOfProducts>
357 <speciesReference species="CMPD_0000000003" stoichiometry="1" constant="true"/>
358 <speciesReference species="MNXM11" stoichiometry="1" constant="true"/>
359 </listOfProducts>
360 </reaction>
361 <reaction metaid="c9c2d56fd0ad9d5b8cd80acad4b5df22945ab4de50db7b24db52a91a7560c3ff" sboTerm="SBO:0000176" id="rxn_2" reversible="false" fast="false" fbc:lowerFluxBound="BRS_FBC_0_0" fbc:upperFluxBound="BRS_FBC_10000_0">
362 <annotation>
363 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
364 <rdf:Description rdf:about="#c9c2d56fd0ad9d5b8cd80acad4b5df22945ab4de50db7b24db52a91a7560c3ff">
365 <bqbiol:is>
366 <rdf:Bag>
367 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.96"/>
368 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.99"/>
369 <rdf:li rdf:resource="http://identifiers.org/ec-code/2.5.1.32"/>
370 </rdf:Bag>
371 </bqbiol:is>
372 </rdf:Description>
373 <rdf:BRSynth rdf:about="#c9c2d56fd0ad9d5b8cd80acad4b5df22945ab4de50db7b24db52a91a7560c3ff">
374 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
375 <brsynth:smiles value="[H]OP(=O)(O[H])OP(=O)(O[H])OC([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H]&gt;&gt;[H]C(=C([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H].O=P(O)(O)OP(=O)(O)O.O=P(O)(O)OP(=O)(O)O"/>
376 <brsynth:rp2_transfo_id value="TRS_0_1_9"/>
377 <brsynth:rule_ids>
378 <brsynth:RR-02-bedda4e2f5001e0c-14-F/>
379 </brsynth:rule_ids>
380 <brsynth:tmpl_rxn_ids>
381 <brsynth:MNXR111250/>
382 <brsynth:MNXR111499/>
383 <brsynth:MNXR113543/>
384 <brsynth:MNXR118024/>
385 <brsynth:MNXR139549/>
386 </brsynth:tmpl_rxn_ids>
387 <brsynth:rule_score value="0.5518755963407151"/>
388 <brsynth:idx_in_path value="2"/>
389 <brsynth:selenzy/>
390 <brsynth:fba_biomass>
391 <brsynth:value value="0.0"/>
392 <brsynth:units value="gDW / gDW / hour"/>
393 </brsynth:fba_biomass>
394 <brsynth:fba_fraction>
395 <brsynth:value value="0.4741875610167627"/>
396 <brsynth:units value="milimole / gDW / hour"/>
397 </brsynth:fba_fraction>
398 <brsynth:thermo_dG0_prime>
399 <brsynth:value value="-119.13360567395966"/>
400 <brsynth:error value="11.000567449695138"/>
401 <brsynth:units value="kilojoule / mole"/>
402 </brsynth:thermo_dG0_prime>
403 <brsynth:thermo_dGm_prime>
404 <brsynth:value value="-153.36328074340173"/>
405 <brsynth:error value="11.000567449695138"/>
406 <brsynth:units value="kilojoule / mole"/>
407 </brsynth:thermo_dGm_prime>
408 <brsynth:thermo_dG_prime>
409 <brsynth:value value="-119.13360567395966"/>
410 <brsynth:error value="11.000567449695138"/>
411 <brsynth:units value="kilojoule / mole"/>
412 </brsynth:thermo_dG_prime>
413 <brsynth:thermo_dG>
414 <brsynth:value value="-1501.0650763644926"/>
415 <brsynth:error value="11.000567449695138"/>
416 <brsynth:units value="kilojoule / mole"/>
417 </brsynth:thermo_dG>
418 </brsynth:brsynth>
419 </rdf:BRSynth>
420 </rdf:RDF>
421 </annotation>
422 <listOfReactants>
423 <speciesReference species="CMPD_0000000003" stoichiometry="1" constant="true"/>
424 </listOfReactants>
425 <listOfProducts>
426 <speciesReference species="CMPD_0000000001" stoichiometry="1" constant="true"/>
427 <speciesReference species="MNXM11" stoichiometry="2" constant="true"/>
428 </listOfProducts>
429 </reaction>
430 <reaction metaid="_376841fa42ba139764a5509b9d817e2e540d0e228582c970025c73ae1ee77c0d" sboTerm="SBO:0000176" id="rxn_3" reversible="false" fast="false" fbc:lowerFluxBound="BRS_FBC_0_0" fbc:upperFluxBound="BRS_FBC_10000_0">
431 <annotation>
432 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
433 <rdf:Description rdf:about="#_376841fa42ba139764a5509b9d817e2e540d0e228582c970025c73ae1ee77c0d">
434 <bqbiol:is>
435 <rdf:Bag>
436 <rdf:li rdf:resource="http://identifiers.org/ec-code/1.3.99.31"/>
437 </rdf:Bag>
438 </bqbiol:is>
439 </rdf:Description>
440 <rdf:BRSynth rdf:about="#_376841fa42ba139764a5509b9d817e2e540d0e228582c970025c73ae1ee77c0d">
441 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
442 <brsynth:smiles value="[H]C(=C([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H]&gt;&gt;[H]C(=C([H])C([H])=C(C([H])=C([H])C([H])=C(C([H])=C([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H])C([H])([H])[H])C([H])([H])[H])C([H])=C(C([H])=C([H])C([H])=C(C([H])=C([H])C([H])=C(C([H])([H])[H])C([H])([H])C([H])([H])C([H])=C(C([H])([H])[H])C([H])([H])[H])C([H])([H])[H])C([H])([H])[H]"/>
443 <brsynth:rp2_transfo_id value="TRS_0_0_1"/>
444 <brsynth:rule_ids>
445 <brsynth:RR-02-ae41ec5771136ea5-14-F/>
446 </brsynth:rule_ids>
447 <brsynth:tmpl_rxn_ids>
448 <brsynth:MNXR113128/>
449 </brsynth:tmpl_rxn_ids>
450 <brsynth:rule_score value="0.7358363677022237"/>
451 <brsynth:idx_in_path value="3"/>
452 <brsynth:selenzy/>
453 <brsynth:fba_biomass>
454 <brsynth:value value="0.0"/>
455 <brsynth:units value="gDW / gDW / hour"/>
456 </brsynth:fba_biomass>
457 <brsynth:fba_fraction>
458 <brsynth:value value="0.4741875610167627"/>
459 <brsynth:units value="milimole / gDW / hour"/>
460 </brsynth:fba_fraction>
461 <brsynth:thermo_dG0_prime>
462 <brsynth:value value="1191.8613577748536"/>
463 <brsynth:error value="44.93683979991009"/>
464 <brsynth:units value="kilojoule / mole"/>
465 </brsynth:thermo_dG0_prime>
466 <brsynth:thermo_dGm_prime>
467 <brsynth:value value="1191.8613577748536"/>
468 <brsynth:error value="44.93683979991009"/>
469 <brsynth:units value="kilojoule / mole"/>
470 </brsynth:thermo_dGm_prime>
471 <brsynth:thermo_dG_prime>
472 <brsynth:value value="1191.8613577748536"/>
473 <brsynth:error value="44.93683979991009"/>
474 <brsynth:units value="kilojoule / mole"/>
475 </brsynth:thermo_dG_prime>
476 <brsynth:thermo_dG>
477 <brsynth:value value="329.6284950676197"/>
478 <brsynth:error value="44.93683979991009"/>
479 <brsynth:units value="kilojoule / mole"/>
480 </brsynth:thermo_dG>
481 </brsynth:brsynth>
482 </rdf:BRSynth>
483 </rdf:RDF>
484 </annotation>
485 <listOfReactants>
486 <speciesReference species="CMPD_0000000001" stoichiometry="1" constant="true"/>
487 <speciesReference species="MNXM8975" stoichiometry="4" constant="true"/>
488 </listOfReactants>
489 <listOfProducts>
490 <speciesReference species="MNXM24" stoichiometry="4" constant="true"/>
491 <speciesReference species="TARGET_0000000001" stoichiometry="1" constant="true"/>
492 </listOfProducts>
493 </reaction>
494 </listOfReactions>
495 <groups:listOfGroups>
496 <groups:group metaid="_93eef40c447d295fa61df9270c5fd909ec2ba7ee9883090552c0466873cd4299" groups:id="rp_pathway" groups:kind="collection">
497 <annotation>
498 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
499 <rdf:BRSynth rdf:about="#_93eef40c447d295fa61df9270c5fd909ec2ba7ee9883090552c0466873cd4299">
500 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu">
501 <brsynth:fba_biomass>
502 <brsynth:value value="0.8769972144269784"/>
503 <brsynth:units value="gDW / gDW / hour"/>
504 </brsynth:fba_biomass>
505 <brsynth:fba_fraction>
506 <brsynth:value value="0.4741875610167627"/>
507 <brsynth:units value="milimole / gDW / hour"/>
508 </brsynth:fba_fraction>
509 <brsynth:thermo_dG0_prime>
510 <brsynth:value value="1001.1712044003059"/>
511 <brsynth:error value="46.96681347490446"/>
512 <brsynth:units value="kilojoule / mole"/>
513 </brsynth:thermo_dG0_prime>
514 <brsynth:thermo_dGm_prime>
515 <brsynth:value value="966.9415293308639"/>
516 <brsynth:error value="46.96681347490446"/>
517 <brsynth:units value="kilojoule / mole"/>
518 </brsynth:thermo_dGm_prime>
519 <brsynth:thermo_dG_prime>
520 <brsynth:value value="1001.1712044003059"/>
521 <brsynth:error value="46.96681347490446"/>
522 <brsynth:units value="kilojoule / mole"/>
523 </brsynth:thermo_dG_prime>
524 <brsynth:thermo_dG>
525 <brsynth:value value="-1197.8417871213726"/>
526 <brsynth:error value="46.96681347490446"/>
527 <brsynth:units value="kilojoule / mole"/>
528 </brsynth:thermo_dG>
529 <brsynth:global_score value="0.975385755300522"/>
530 </brsynth:brsynth>
531 </rdf:BRSynth>
532 </rdf:RDF>
533 </annotation>
534 <groups:listOfMembers>
535 <groups:member groups:idRef="rxn_1"/>
536 <groups:member groups:idRef="rxn_2"/>
537 <groups:member groups:idRef="rxn_3"/>
538 </groups:listOfMembers>
539 </groups:group>
540 <groups:group metaid="_613b064337553014ede418c67180137a4561ff11b13f3bfa1a2765ef37ac375a" groups:id="rp_intermediate_species" groups:kind="collection">
541 <annotation>
542 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
543 <rdf:BRSynth rdf:about="#_613b064337553014ede418c67180137a4561ff11b13f3bfa1a2765ef37ac375a">
544 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/>
545 </rdf:BRSynth>
546 </rdf:RDF>
547 </annotation>
548 <groups:listOfMembers>
549 <groups:member groups:idRef="CMPD_0000000001"/>
550 <groups:member groups:idRef="CMPD_0000000003"/>
551 </groups:listOfMembers>
552 </groups:group>
553 <groups:group metaid="_564fce39b23c6cf87d12dc2c612448384fd2cd980fe3fc07829e2ef802645579" groups:id="rp_trunk_species" groups:kind="collection">
554 <annotation>
555 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
556 <rdf:BRSynth rdf:about="#_564fce39b23c6cf87d12dc2c612448384fd2cd980fe3fc07829e2ef802645579">
557 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/>
558 </rdf:BRSynth>
559 </rdf:RDF>
560 </annotation>
561 <groups:listOfMembers>
562 <groups:member groups:idRef="TARGET_0000000001"/>
563 <groups:member groups:idRef="CMPD_0000000003"/>
564 <groups:member groups:idRef="MNXM83"/>
565 <groups:member groups:idRef="MNXM34"/>
566 <groups:member groups:idRef="CMPD_0000000001"/>
567 </groups:listOfMembers>
568 </groups:group>
569 <groups:group metaid="_9e3154173c97366b3980dd1642e1e35d0bdfc3274abc744e89ecb518bcd48378" groups:id="rp_completed_species" groups:kind="collection">
570 <annotation>
571 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
572 <rdf:BRSynth rdf:about="#_9e3154173c97366b3980dd1642e1e35d0bdfc3274abc744e89ecb518bcd48378">
573 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/>
574 </rdf:BRSynth>
575 </rdf:RDF>
576 </annotation>
577 <groups:listOfMembers>
578 <groups:member groups:idRef="MNXM24"/>
579 <groups:member groups:idRef="MNXM11"/>
580 <groups:member groups:idRef="MNXM8975"/>
581 </groups:listOfMembers>
582 </groups:group>
583 <groups:group metaid="_58b3b59284e0d918d6d3f3bcadc2d757726da7594cd899cad4e745836ac967a3" groups:id="rp_sink_species" groups:kind="collection">
584 <annotation>
585 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
586 <rdf:BRSynth rdf:about="#_58b3b59284e0d918d6d3f3bcadc2d757726da7594cd899cad4e745836ac967a3">
587 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/>
588 </rdf:BRSynth>
589 </rdf:RDF>
590 </annotation>
591 <groups:listOfMembers>
592 <groups:member groups:idRef="MNXM11"/>
593 <groups:member groups:idRef="MNXM83"/>
594 <groups:member groups:idRef="MNXM34"/>
595 </groups:listOfMembers>
596 </groups:group>
597 <groups:group metaid="a0f48a6fe4f833a3d15abd7ee5b944b97d629570ac09588e9fb6fdf6196ab189" groups:id="rp_fba_ignored_species" groups:kind="collection">
598 <annotation>
599 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
600 <rdf:BRSynth rdf:about="#a0f48a6fe4f833a3d15abd7ee5b944b97d629570ac09588e9fb6fdf6196ab189">
601 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/>
602 </rdf:BRSynth>
603 </rdf:RDF>
604 </annotation>
605 <groups:listOfMembers>
606 <groups:member groups:idRef="MNXM24"/>
607 <groups:member groups:idRef="MNXM8975"/>
608 </groups:listOfMembers>
609 </groups:group>
610 <groups:group metaid="fb9b29ba20af773fed953f1d6726905a453f235c9a4baa7217f02760bc2057f8" groups:id="rp_thermo_substituted_species" groups:kind="collection">
611 <annotation>
612 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/">
613 <rdf:BRSynth rdf:about="#fb9b29ba20af773fed953f1d6726905a453f235c9a4baa7217f02760bc2057f8">
614 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/>
615 </rdf:BRSynth>
616 </rdf:RDF>
617 </annotation>
618 <groups:listOfMembers>
619 <groups:member groups:idRef="MNXM24"/>
620 <groups:member groups:idRef="TARGET_0000000001"/>
621 <groups:member groups:idRef="MNXM8975"/>
622 </groups:listOfMembers>
623 </groups:group>
624 </groups:listOfGroups>
625 </model>
626 </sbml>