Mercurial > repos > tduigou > rptools_rpviz
changeset 9:72e1ab9de2a1 draft default tip
planemo upload for repository https://github.com/galaxyproject/tools-iuc/tree/master/tools/rptools commit 4ae625e3ff1de2034c8d29ad26434f41e3230c2c-dirty
| author | tduigou |
|---|---|
| date | Fri, 24 Oct 2025 09:47:42 +0000 |
| parents | 67a1822ee30e |
| children | |
| files | macros.xml rpviz.xml |
| diffstat | 2 files changed, 5 insertions(+), 2 deletions(-) [+] |
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--- a/macros.xml Thu Oct 23 14:40:11 2025 +0000 +++ b/macros.xml Fri Oct 24 09:47:42 2025 +0000 @@ -1,6 +1,6 @@ <macros> <token name="@TOOL_VERSION@">6.7.1</token> - <token name="@VERSION_SUFFIX@">0</token> + <token name="@VERSION_SUFFIX@">1</token> <xml name="requirements"> <requirements> <requirement type="package" version="@TOOL_VERSION@">rptools</requirement>
--- a/rpviz.xml Thu Oct 23 14:40:11 2025 +0000 +++ b/rpviz.xml Fri Oct 24 09:47:42 2025 +0000 @@ -6,11 +6,14 @@ </macros> <expand macro="requirements" /> <command detect_errors="exit_code"><![CDATA[ + #import re #set input='indir' mkdir -p '$input' && #if str($input_type_conditional.input_type) == "sbml": #for $file in $input_type_conditional.input_sbml - cp '$file.file_name' '$input/$file.name' && + #set identifier = re.sub('[^\s\w\-]', '_', str($file.element_identifier)) + #set file_name = $identifier + '.xml' + cp '$file.file_name' '$input/${file_name}' && #end for #elif str($input_type_conditional.input_type) == "tar": #set input=$input_type_conditional.input_tar