# HG changeset patch
# User tduigou
# Date 1682903954 0
# Node ID ada9a9847d10b7e9a457015bd9c6044567aafa0a
# Parent 71ee7ebb4a6773e709225026689d1da2302b657c
planemo upload for repository https://github.com/brsynth/rrparser commit 2e8aa2e7c0581c7eed2074d15f7e4317ecde2ad6
diff -r 71ee7ebb4a67 -r ada9a9847d10 LICENSE
--- a/LICENSE Mon Apr 03 12:45:49 2023 +0000
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,22 +0,0 @@
-MIT License
-
-Copyright (c) 2020 Jean-Loup Faulon's group & INRA
-Copyright (c) 2020 University of Evry / Paris-Saclay
-
-Permission is hereby granted, free of charge, to any person obtaining a copy
-of this software and associated documentation files (the "Software"), to deal
-in the Software without restriction, including without limitation the rights
-to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
-copies of the Software, and to permit persons to whom the Software is
-furnished to do so, subject to the following conditions:
-
-The above copyright notice and this permission notice shall be included in all
-copies or substantial portions of the Software.
-
-THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
-IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
-FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
-AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
-LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
-OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
-SOFTWARE.
diff -r 71ee7ebb4a67 -r ada9a9847d10 README.md
--- a/README.md Mon Apr 03 12:45:49 2023 +0000
+++ /dev/null Thu Jan 01 00:00:00 1970 +0000
@@ -1,71 +0,0 @@
-# RRulesParser Galaxy wrapper
-
-The open-source software package RRulesParser is available here : https://github.com/brsynth/RRParser
-
-## Installing
-
-* Create a new section in the Galaxy config file `config/tool_conf.xml` and paste the following:
-```
-
-```
-
-* Make sure that the following entry exists under Galaxy's destination tag in `config/job_conf.xml`:
-```
-
-```
-
-And that the destination of the tool is referred under the tools tag in `config/job_conf.xml`:
-
-```
-
-```
-
-## How to run RRulesParser wrapper tests
-
-In order to execute tests on RRulesParser wrapper, you need to:
-
- - Connect to your galaxy instance in interactive mode:
-
- ```bash
- docker exec -it -u root galaxy_galaxy_1 bash
- ```
- - Copy all the contents of `test-data` folder into your own test-data directory which is located in your local galaxy instance : `/galaxy/test-data`. It contains all the input files and expected output files needed for the tests.
-
- - Install Planemo:
- You can see here the documentation for Planemo Installation : https://planemo.readthedocs.io/en/latest/installation.html
- Note that they recommand to install Planemo by setting up a virtual environment:
-
- ```bash
- python3 -m venv planemo
- . planemo/bin/activate
- pip install -U planemo
- ```
-
- Upgrade pip if needed.
-
- - run the tests:
-
- ```bash
- planemo test --conda_channels conda-forge tools/synbiocad-galaxy-wrappers/RRulesParser/wrap.xml --biocontainers --no_conda_auto_init
- ```
-
- IMPORTANT: Maybe you will need to remove CONDA from your PATH for the command `planemo test` to run correctly. To do that, you can edit this file `~/.bashrc`, comment this line `PATH="/root/anaconda3/bin:$PATH"` and save changes.
-
- Planemo will output an html test summary `tool_test_output.html`.
-
-## Built With
-
-* [Galaxy](https://galaxyproject.org) - The Galaxy project
-
-
-## Authors
-
-* Melchior du Lac
-* Joan Hérisson
-* Thomas Duigou
-
-## License
-
-This project is licensed under the MIT License - see the [LICENSE.md](LICENSE.md) file for details
diff -r 71ee7ebb4a67 -r ada9a9847d10 rrparser.xml
--- a/rrparser.xml Mon Apr 03 12:45:49 2023 +0000
+++ b/rrparser.xml Mon May 01 01:19:14 2023 +0000
@@ -38,6 +38,9 @@
+
+
+
@@ -109,6 +112,6 @@
- 10.1093/nar/gky940
+ 10.1093/nar/gky940