Mercurial > repos > tduigou > sbml2sbol
changeset 1:83108f3c65aa draft
"planemo upload commit 2f1af427fa4c4f2aad53ab94c4cdb51456c66019-dirty"
| author | tduigou |
|---|---|
| date | Wed, 09 Feb 2022 14:42:01 +0000 |
| parents | f0a06f526c7f |
| children | 9b3279f37e41 |
| files | sbml2sbol.xml |
| diffstat | 1 files changed, 14 insertions(+), 7 deletions(-) [+] |
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--- a/sbml2sbol.xml Thu Dec 09 14:21:48 2021 +0000 +++ b/sbml2sbol.xml Wed Feb 09 14:42:01 2022 +0000 @@ -1,7 +1,10 @@ -<tool id="sbml2sbol" name="SbmlToSbol" version="0.1.12"> +<tool id="sbml2sbol" name="SbmlToSbol" version="@TOOL_VERSION@" profile="19.09"> <description>Convert sbml to sbol format</description> + <macros> + <token name="@TOOL_VERSION@">0.1.13</token> + </macros> <requirements> - <requirement type="package" version="0.1.12">sbml2sbol</requirement> + <requirement type="package" version="@TOOL_VERSION@">sbml2sbol</requirement> </requirements> <command detect_errors="exit_code"><![CDATA[ python -m sbml2sbol @@ -14,7 +17,7 @@ #end if --max_prot_per_react '$adv.max_prot_per_react' #if $adv.tirs - --tirs $adv.tirs + --tirs '$adv.tirs' #end if --pathway_id '$adv.pathway_id' --uniprotID_key '$adv.uniprotID_key' @@ -23,10 +26,14 @@ <param name="sbml_single_input" type="data" format="xml" label="Pathway (SBML)" /> <section name="adv" title="Advanced Options" expanded="false"> <param name="rbs" type="boolean" label="Calculate the RBS strength?" checked="true" /> - <param name="max_prot_per_react" type="integer" value="3" label="The maximum number of proteins per reaction" /> + <param name="max_prot_per_react" type="integer" value="3" min="1" max="20" label="The maximum number of proteins per reaction" /> <param name="tirs" type="text" optional="true" label="Space separated RBS strength values" /> - <param name="pathway_id" type="text" value="rp_pathway" label="Group ID of the heterologous pathway" /> - <param name="uniprotID_key" type="text" value="selenzy" label="Uniprot ID" /> + <param name="pathway_id" type="text" value="rp_pathway" label="Group ID of the heterologous pathway" > + <validator type="empty_field" message="Pathway ID is required"/> + </param> + <param name="uniprotID_key" type="text" value="selenzy" label="Uniprot ID" > + <validator type="empty_field" message="Uniprot ID is required"/> + </param> </section> </inputs> <outputs> @@ -72,7 +79,7 @@ Version ---------- -0.1.12 +0.1.13 License -------