Mercurial > repos > tduigou > sbol3_diff
view test-data/sbol3_diff_out.txt @ 2:67fd1abac44b draft default tip
planemo upload for repository https://github.com/SynBioDex/SBOL-utilities commit 51525bc3c90f9bdd38e26e74e6a8761306b3a442
author | tduigou |
---|---|
date | Mon, 15 May 2023 07:38:18 +0000 |
parents | 024def08af09 |
children |
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Triples in simple_library.nt, not in expanded_simple_library.nt: http://sbolstandard.org/testfiles/BasicParts, http://sbols.org/v3#member, http://parts.igem.org/J364007 http://sbolstandard.org/testfiles/_2018_Interlab, http://sbols.org/v3#displayId, _2018_Interlab http://sbolstandard.org/testfiles/FPs_small_template/Constraint2, http://sbols.org/v3#object, http://sbolstandard.org/testfiles/FPs_small_template/LocalSubComponent1 http://sbolstandard.org/testfiles/FPs_small_template, http://sbols.org/v3#hasConstraint, http://sbolstandard.org/testfiles/FPs_small_template/Constraint2 https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/LmrA, http://sbols.org/v3#name, LmrA http://sbolstandard.org/testfiles/Round_1_order_template, http://sbols.org/v3#hasFeature, http://sbolstandard.org/testfiles/Round_1_order_template/LocalSubComponent1 http://sbolstandard.org/testfiles/FPs_small_ins_template/SubComponent1, http://sbols.org/v3#orientation, http://sbols.org/v3#inline http://sbolstandard.org/testfiles/_2018_Interlab_template/Constraint1, http://sbols.org/v3#restriction, http://sbols.org/v3#meets http://sbolstandard.org/testfiles/BasicParts, http://sbols.org/v3#member, http://sbolstandard.org/testfiles/pSB1C3 http://sbolstandard.org/testfiles/FPs_small_template, http://sbols.org/v3#type, https://identifiers.org/SBO:0000251 http://sbolstandard.org/testfiles/FPs_small/VariableFeature1, http://sbols.org/v3#variable, http://sbolstandard.org/testfiles/FPs_small_template/LocalSubComponent1 http://sbolstandard.org/testfiles/Round_1_order_template/LocalSubComponent1, http://sbols.org/v3#orientation, http://sbols.org/v3#inline http://sbolstandard.org/testfiles/FPs_small, http://sbols.org/v3#hasVariableFeature, http://sbolstandard.org/testfiles/FPs_small/VariableFeature1 http://sbolstandard.org/testfiles/_2018_Interlab_ins/VariableFeature1, http://sbols.org/v3#variant, http://parts.igem.org/J364002 http://sbolstandard.org/testfiles/FPs_small_ins_template/SubComponent1, http://sbols.org/v3#displayId, SubComponent1 http://sbolstandard.org/testfiles/CompositeParts, http://sbols.org/v3#member, http://sbolstandard.org/testfiles/BB_B0032_BB http://sbolstandard.org/testfiles/FPs_small_ins, http://sbols.org/v3#hasVariableFeature, http://sbolstandard.org/testfiles/FPs_small_ins/VariableFeature1 http://sbolstandard.org/testfiles/FPs_small_ins_template/Constraint4, http://sbols.org/v3#subject, http://sbolstandard.org/testfiles/FPs_small_ins_template/LocalSubComponent2 http://sbolstandard.org/testfiles/FPs_small_ins/VariableFeature2, http://www.w3.org/1999/02/22-rdf-syntax-ns#type, http://sbols.org/v3#VariableFeature http://sbolstandard.org/testfiles/FPs_small_ins/VariableFeature1, http://sbols.org/v3#variant, http://parts.igem.org/J23105 http://sbolstandard.org/testfiles/All_FPs/VariableFeature1, http://sbols.org/v3#variant, https://www.ncbi.nlm.nih.gov/nuccore/ATP07149_1 http://sbolstandard.org/testfiles/_2018_Interlab_template/SubComponent1, http://sbols.org/v3#instanceOf, http://sbolstandard.org/testfiles/pSB1C3 http://sbolstandard.org/testfiles/CompositeParts, http://sbols.org/v3#member, http://sbolstandard.org/testfiles/FPs_small_ins http://sbolstandard.org/testfiles/FPs_small_ins_template, http://sbols.org/v3#hasFeature, http://sbolstandard.org/testfiles/FPs_small_ins_template/LocalSubComponent1 http://sbolstandard.org/testfiles/_2018_Interlab_ins_template, http://sbols.org/v3#displayId, _2018_Interlab_ins_template http://sbolstandard.org/testfiles/_2018_Interlab_template/Constraint1, http://sbols.org/v3#object, http://sbolstandard.org/testfiles/_2018_Interlab_template/SubComponent1 http://sbolstandard.org/testfiles/FPs_small_ins_template/Constraint3, http://sbols.org/v3#subject, http://sbolstandard.org/testfiles/FPs_small_ins_template/SubComponent2 http://sbolstandard.org/testfiles/_2018_Interlab_ins, http://sbols.org/v3#description, Swapped R0040 for TwistNeg as the negative control, due to Twist minimum synthesis length http://sbolstandard.org/testfiles/_2018_Interlab_ins, http://www.w3.org/1999/02/22-rdf-syntax-ns#type, http://sbols.org/v3#CombinatorialDerivation http://sbolstandard.org/testfiles/FPs_small_ins/VariableFeature1, http://www.w3.org/1999/02/22-rdf-syntax-ns#type, http://sbols.org/v3#VariableFeature http://sbolstandard.org/testfiles/FPs_small, http://www.w3.org/1999/02/22-rdf-syntax-ns#type, http://sbols.org/v3#CombinatorialDerivation http://sbolstandard.org/testfiles/All_FPs_template/LocalSubComponent1, http://sbols.org/v3#name, Part 1 http://sbolstandard.org/testfiles/Round_1_order_template/LocalSubComponent1, http://sbols.org/v3#displayId, LocalSubComponent1 http://sbolstandard.org/testfiles/FPs_small/VariableFeature1, http://sbols.org/v3#displayId, VariableFeature1 http://sbolstandard.org/testfiles/FPs_small_ins_template/Constraint5, http://sbols.org/v3#subject, http://sbolstandard.org/testfiles/FPs_small_ins_template/SubComponent3 http://sbolstandard.org/testfiles/Round_1_order/VariableFeature1, http://sbols.org/v3#variantDerivation, http://sbolstandard.org/testfiles/_2018_Interlab http://sbolstandard.org/testfiles/Round_1_order, http://www.w3.org/1999/02/22-rdf-syntax-ns#type, http://sbols.org/v3#CombinatorialDerivation http://sbolstandard.org/testfiles/Round_1_order/VariableFeature1, http://www.w3.org/1999/02/22-rdf-syntax-ns#type, http://sbols.org/v3#VariableFeature http://sbolstandard.org/testfiles/BasicParts, http://sbols.org/v3#member, http://sbolstandard.org/testfiles/B0015 http://sbolstandard.org/testfiles/FPs_small_ins_template/Constraint2, http://sbols.org/v3#subject, http://sbolstandard.org/testfiles/FPs_small_ins_template/LocalSubComponent1 http://sbolstandard.org/testfiles/CompositeParts, http://sbols.org/v3#displayId, CompositeParts http://sbolstandard.org/testfiles/_2018_Interlab_ins_template, http://www.w3.org/1999/02/22-rdf-syntax-ns#type, http://sbols.org/v3#Component http://sbolstandard.org/testfiles/FPs_small_ins_template, http://sbols.org/v3#type, https://identifiers.org/SBO:0000251 http://sbolstandard.org/testfiles/_2018_Interlab_template/LocalSubComponent1, http://sbols.org/v3#name, Inserted Construct http://sbolstandard.org/testfiles/_2018_Interlab_ins/VariableFeature1, http://sbols.org/v3#variant, http://parts.igem.org/I20270 http://sbolstandard.org/testfiles/FPs_small_ins_template/LocalSubComponent1, http://sbols.org/v3#type, https://identifiers.org/SBO:0000251 http://sbolstandard.org/testfiles/FPs_small_ins_template/Constraint4, http://www.w3.org/1999/02/22-rdf-syntax-ns#type, http://sbols.org/v3#Constraint http://sbolstandard.org/testfiles/_2018_Interlab, http://sbols.org/v3#template, http://sbolstandard.org/testfiles/_2018_Interlab_template http://sbolstandard.org/testfiles/FPs_small_ins_template/Constraint1, http://www.w3.org/1999/02/22-rdf-syntax-ns#type, http://sbols.org/v3#Constraint http://sbolstandard.org/testfiles/_2018_Interlab_template, http://sbols.org/v3#hasFeature, http://sbolstandard.org/testfiles/_2018_Interlab_template/LocalSubComponent1 http://sbolstandard.org/testfiles/FPs_small_ins_template/LocalSubComponent2, http://sbols.org/v3#displayId, LocalSubComponent2 http://sbolstandard.org/testfiles/FPs_small_ins_template, http://sbols.org/v3#hasConstraint, http://sbolstandard.org/testfiles/FPs_small_ins_template/Constraint5 http://sbolstandard.org/testfiles/FPs_small_ins, http://sbols.org/v3#strategy, http://sbols.org/v3#enumerate http://sbolstandard.org/testfiles/_2018_Interlab_template, http://sbols.org/v3#type, https://identifiers.org/SBO:0000251 http://sbolstandard.org/testfiles/FPs_small_ins_template/Constraint2, http://sbols.org/v3#object, http://sbolstandard.org/testfiles/FPs_small_ins_template/SubComponent2 http://sbolstandard.org/testfiles/BasicParts, http://sbols.org/v3#member, http://parts.igem.org/J23101 http://sbolstandard.org/testfiles/FPs_small_template, http://sbols.org/v3#hasFeature, http://sbolstandard.org/testfiles/FPs_small_template/LocalSubComponent1 http://sbolstandard.org/testfiles/FPs_small, http://sbols.org/v3#template, http://sbolstandard.org/testfiles/FPs_small_template http://sbolstandard.org/testfiles/FPs_small_ins_template/LocalSubComponent1, http://www.w3.org/1999/02/22-rdf-syntax-ns#type, http://sbols.org/v3#LocalSubComponent http://sbolstandard.org/testfiles/CompositeParts, http://sbols.org/v3#member, http://sbolstandard.org/testfiles/Round_1_order http://sbolstandard.org/testfiles/FPs_small_ins_template/SubComponent2, http://sbols.org/v3#instanceOf, http://sbolstandard.org/testfiles/BB_B0032_BB http://sbolstandard.org/testfiles/FinalProducts, http://sbols.org/v3#displayId, FinalProducts http://sbolstandard.org/testfiles/CompositeParts, http://sbols.org/v3#member, http://sbolstandard.org/testfiles/UNSX_UP http://sbolstandard.org/testfiles/BasicParts, http://sbols.org/v3#name, Fluorescence calibration basic parts http://sbolstandard.org/testfiles/FPs_small_template/SubComponent1, http://sbols.org/v3#instanceOf, http://sbolstandard.org/testfiles/pSB1C3 http://sbolstandard.org/testfiles/Round_1_order/VariableFeature1, http://sbols.org/v3#variable, http://sbolstandard.org/testfiles/Round_1_order_template/LocalSubComponent1 http://sbolstandard.org/testfiles/FPs_small_template, http://sbols.org/v3#hasFeature, http://sbolstandard.org/testfiles/FPs_small_template/SubComponent1 http://sbolstandard.org/testfiles/Round_1_order/VariableFeature1, http://sbols.org/v3#cardinality, http://sbols.org/v3#one http://sbolstandard.org/testfiles/FPs_small_ins, http://sbols.org/v3#name, FPs small insert http://sbolstandard.org/testfiles/_2018_Interlab, http://sbols.org/v3#hasNamespace, http://sbolstandard.org/testfiles http://sbolstandard.org/testfiles/FPs_small_template, http://sbols.org/v3#hasConstraint, http://sbolstandard.org/testfiles/FPs_small_template/Constraint1 http://sbolstandard.org/testfiles/BasicParts, http://sbols.org/v3#member, http://sbolstandard.org/testfiles/B0032 http://sbolstandard.org/testfiles/LinearDNAProducts, http://sbols.org/v3#displayId, LinearDNAProducts http://sbolstandard.org/testfiles/_2018_Interlab_ins_template/LocalSubComponent1, http://sbols.org/v3#displayId, LocalSubComponent1 https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/LmrA, http://sbols.org/v3#hasNamespace, https://synbiohub.programmingbiology.org/public/Eco1C1G1T1 http://sbolstandard.org/testfiles/FPs_small_ins/VariableFeature2, http://sbols.org/v3#variantDerivation, http://sbolstandard.org/testfiles/All_FPs http://sbolstandard.org/testfiles/FPs_small_template, http://sbols.org/v3#hasNamespace, http://sbolstandard.org/testfiles http://sbolstandard.org/testfiles/_2018_Interlab_template/Constraint1, http://www.w3.org/1999/02/22-rdf-syntax-ns#type, http://sbols.org/v3#Constraint http://sbolstandard.org/testfiles/All_FPs_template, http://sbols.org/v3#hasFeature, http://sbolstandard.org/testfiles/All_FPs_template/LocalSubComponent1 http://sbolstandard.org/testfiles/Round_1_order, http://sbols.org/v3#name, Round 1 order http://sbolstandard.org/testfiles/FPs_small_template/Constraint1, http://www.w3.org/1999/02/22-rdf-syntax-ns#type, http://sbols.org/v3#Constraint http://sbolstandard.org/testfiles/FPs_small_ins_template, http://sbols.org/v3#hasConstraint, http://sbolstandard.org/testfiles/FPs_small_ins_template/Constraint3 http://sbolstandard.org/testfiles/Round_1_order, http://sbols.org/v3#description, http://sbolstandard.org/testfiles/FPs_small_ins_template/Constraint1, http://sbols.org/v3#object, http://sbolstandard.org/testfiles/FPs_small_ins_template/LocalSubComponent1 http://sbolstandard.org/testfiles/BasicParts, http://sbols.org/v3#member, http://sbolstandard.org/testfiles/UP_element_consensus http://sbolstandard.org/testfiles/BasicParts, http://sbols.org/v3#member, http://sbolstandard.org/testfiles/mTagBFP2 http://sbolstandard.org/testfiles/CompositeParts, http://www.w3.org/1999/02/22-rdf-syntax-ns#type, http://sbols.org/v3#Collection http://sbolstandard.org/testfiles/FinalProducts, http://sbols.org/v3#hasNamespace, http://sbolstandard.org/testfiles http://sbolstandard.org/testfiles/FPs_small_ins_template/Constraint5, http://sbols.org/v3#displayId, Constraint5 http://sbolstandard.org/testfiles/FinalProducts, http://sbols.org/v3#member, http://sbolstandard.org/testfiles/_2018_Interlab http://sbolstandard.org/testfiles/FPs_small_ins_template/LocalSubComponent2, http://sbols.org/v3#type, https://identifiers.org/SBO:0000251 http://sbolstandard.org/testfiles/BasicParts, http://sbols.org/v3#member, http://sbolstandard.org/testfiles/UNSX http://sbolstandard.org/testfiles/_2018_Interlab_ins_template, http://sbols.org/v3#type, https://identifiers.org/SBO:0000251 http://sbolstandard.org/testfiles/FPs_small_ins_template/LocalSubComponent1, http://sbols.org/v3#orientation, http://sbols.org/v3#inline http://sbolstandard.org/testfiles/FPs_small_ins/VariableFeature1, http://sbols.org/v3#cardinality, http://sbols.org/v3#one http://sbolstandard.org/testfiles/_2018_Interlab_ins, http://sbols.org/v3#hasNamespace, http://sbolstandard.org/testfiles http://sbolstandard.org/testfiles/_2018_Interlab_ins_template/LocalSubComponent1, http://sbols.org/v3#orientation, http://sbols.org/v3#inline http://sbolstandard.org/testfiles/FPs_small_template/Constraint1, http://sbols.org/v3#object, http://sbolstandard.org/testfiles/FPs_small_template/SubComponent1 http://sbolstandard.org/testfiles/Round_1_order_template, http://www.w3.org/1999/02/22-rdf-syntax-ns#type, http://sbols.org/v3#Component http://sbolstandard.org/testfiles/FPs_small_ins_template, http://sbols.org/v3#hasFeature, http://sbolstandard.org/testfiles/FPs_small_ins_template/SubComponent1 http://sbolstandard.org/testfiles/FPs_small_ins_template/Constraint4, http://sbols.org/v3#restriction, http://sbols.org/v3#meets http://sbolstandard.org/testfiles/_2018_Interlab_ins/VariableFeature1, http://sbols.org/v3#variant, http://parts.igem.org/J364009 http://sbolstandard.org/testfiles/FPs_small_ins_template, http://sbols.org/v3#hasConstraint, http://sbolstandard.org/testfiles/FPs_small_ins_template/Constraint4 http://sbolstandard.org/testfiles/LinearDNAProducts, http://sbols.org/v3#hasNamespace, http://sbolstandard.org/testfiles http://sbolstandard.org/testfiles/CompositeParts, http://sbols.org/v3#member, http://sbolstandard.org/testfiles/_2018_Interlab_ins http://sbolstandard.org/testfiles/_2018_Interlab_template, http://sbols.org/v3#hasConstraint, http://sbolstandard.org/testfiles/_2018_Interlab_template/Constraint2 http://sbolstandard.org/testfiles/FPs_small_ins_template/LocalSubComponent2, http://www.w3.org/1999/02/22-rdf-syntax-ns#type, http://sbols.org/v3#LocalSubComponent http://sbolstandard.org/testfiles/_2018_Interlab_template/Constraint1, http://sbols.org/v3#subject, http://sbolstandard.org/testfiles/_2018_Interlab_template/LocalSubComponent1 http://sbolstandard.org/testfiles/BasicParts, http://sbols.org/v3#member, http://sbolstandard.org/testfiles/BioBricks_scar_long http://sbolstandard.org/testfiles/FPs_small_ins_template/SubComponent3, http://sbols.org/v3#instanceOf, http://sbolstandard.org/testfiles/STOP http://sbolstandard.org/testfiles/All_FPs/VariableFeature1, http://sbols.org/v3#variant, http://parts.igem.org/E0040 http://sbolstandard.org/testfiles/FPs_small_ins_template/Constraint3, http://sbols.org/v3#restriction, http://sbols.org/v3#meets http://sbolstandard.org/testfiles/FPs_small_ins/VariableFeature2, http://sbols.org/v3#displayId, VariableFeature2 http://sbolstandard.org/testfiles/All_FPs_template/LocalSubComponent1, http://www.w3.org/1999/02/22-rdf-syntax-ns#type, http://sbols.org/v3#LocalSubComponent http://sbolstandard.org/testfiles/FPs_small_ins_template, http://www.w3.org/1999/02/22-rdf-syntax-ns#type, http://sbols.org/v3#Component http://sbolstandard.org/testfiles/All_FPs/VariableFeature1, http://sbols.org/v3#variant, http://parts.igem.org/E1010 http://sbolstandard.org/testfiles/_2018_Interlab_template/LocalSubComponent1, http://sbols.org/v3#type, https://identifiers.org/SBO:0000251 http://sbolstandard.org/testfiles/FPs_small_ins, http://sbols.org/v3#displayId, FPs_small_ins http://sbolstandard.org/testfiles/_2018_Interlab_ins_template, http://sbols.org/v3#hasNamespace, http://sbolstandard.org/testfiles http://sbolstandard.org/testfiles/LinearDNAProducts, http://sbols.org/v3#member, http://sbolstandard.org/testfiles/FPs_small_ins http://sbolstandard.org/testfiles/FPs_small_template/Constraint2, http://sbols.org/v3#subject, http://sbolstandard.org/testfiles/FPs_small_template/SubComponent1 http://sbolstandard.org/testfiles/FinalProducts, http://sbols.org/v3#member, http://sbolstandard.org/testfiles/FPs_small https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/LmrA, http://www.w3.org/ns/prov#wasDerivedFrom, https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/LmrA/1 http://sbolstandard.org/testfiles/_2018_Interlab_ins/VariableFeature1, http://sbols.org/v3#displayId, VariableFeature1 https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/LmrA, http://sbols.org/v3#type, https://identifiers.org/SBO:0000251 http://sbolstandard.org/testfiles/_2018_Interlab_template, http://sbols.org/v3#displayId, _2018_Interlab_template http://sbolstandard.org/testfiles/BasicParts, http://sbols.org/v3#displayId, BasicParts http://sbolstandard.org/testfiles/Round_1_order_template, http://sbols.org/v3#displayId, Round_1_order_template http://sbolstandard.org/testfiles/_2018_Interlab_template, http://www.w3.org/1999/02/22-rdf-syntax-ns#type, http://sbols.org/v3#Component http://sbolstandard.org/testfiles/FPs_small_ins, http://www.w3.org/1999/02/22-rdf-syntax-ns#type, http://sbols.org/v3#CombinatorialDerivation http://sbolstandard.org/testfiles/_2018_Interlab_template/LocalSubComponent1, http://www.w3.org/1999/02/22-rdf-syntax-ns#type, http://sbols.org/v3#LocalSubComponent http://sbolstandard.org/testfiles/FPs_small_ins_template/SubComponent2, http://sbols.org/v3#orientation, http://sbols.org/v3#inline http://sbolstandard.org/testfiles/BasicParts, http://sbols.org/v3#member, http://parts.igem.org/J364002 http://sbolstandard.org/testfiles/FPs_small_ins_template/SubComponent4, http://www.w3.org/1999/02/22-rdf-syntax-ns#type, http://sbols.org/v3#SubComponent http://sbolstandard.org/testfiles/_2018_Interlab_ins, http://sbols.org/v3#template, http://sbolstandard.org/testfiles/_2018_Interlab_ins_template http://sbolstandard.org/testfiles/Round_1_order, http://sbols.org/v3#displayId, Round_1_order http://sbolstandard.org/testfiles/_2018_Interlab/VariableFeature1, http://www.w3.org/1999/02/22-rdf-syntax-ns#type, http://sbols.org/v3#VariableFeature http://sbolstandard.org/testfiles/All_FPs/VariableFeature1, http://sbols.org/v3#variable, http://sbolstandard.org/testfiles/All_FPs_template/LocalSubComponent1 http://sbolstandard.org/testfiles/FPs_small_ins/VariableFeature1, http://sbols.org/v3#variable, http://sbolstandard.org/testfiles/FPs_small_ins_template/LocalSubComponent1 http://sbolstandard.org/testfiles/FPs_small_template/LocalSubComponent1, http://sbols.org/v3#name, Inserted Construct http://sbolstandard.org/testfiles/FPs_small_ins_template/LocalSubComponent2, http://sbols.org/v3#orientation, http://sbols.org/v3#inline http://sbolstandard.org/testfiles/All_FPs_template, http://www.w3.org/1999/02/22-rdf-syntax-ns#type, http://sbols.org/v3#Component http://sbolstandard.org/testfiles/_2018_Interlab/VariableFeature1, http://sbols.org/v3#variantDerivation, http://sbolstandard.org/testfiles/_2018_Interlab_ins http://sbolstandard.org/testfiles/All_FPs, http://sbols.org/v3#description, http://sbolstandard.org/testfiles/FPs_small_ins_template/SubComponent4, http://sbols.org/v3#displayId, SubComponent4 http://sbolstandard.org/testfiles/All_FPs, http://www.w3.org/1999/02/22-rdf-syntax-ns#type, http://sbols.org/v3#CombinatorialDerivation http://sbolstandard.org/testfiles/FPs_small_ins_template/Constraint1, http://sbols.org/v3#restriction, http://sbols.org/v3#meets http://sbolstandard.org/testfiles/LinearDNAProducts, http://sbols.org/v3#name, Linear DNA Products https://synbiohub.programmingbiology.org/public/Eco1C1G1T1/LmrA, http://www.w3.org/1999/02/22-rdf-syntax-ns#type, http://sbols.org/v3#Component http://sbolstandard.org/testfiles/FPs_small_ins_template/Constraint4, http://sbols.org/v3#displayId, Constraint4 http://sbolstandard.org/testfiles/FPs_small_ins_template/SubComponent1, http://sbols.org/v3#instanceOf, http://sbolstandard.org/testfiles/UNSX_UP 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