Mercurial > repos > tduigou > sbol_converter

comparison sbol_converter.xml @ 3:8d020045186c draft

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planemo upload for repository https://github.com/SynBioDex/SBOL-utilities commit eb4ce54a2a9e0cac18e737071a359d19f3af9a75
author tduigou
date Mon, 15 May 2023 01:30:26 +0000
parents 38a0feb2e79d
children 5814c9ffbdef
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2:4ed045ebe449 3:8d020045186c
1 <tool id="sbol_converter" name="SBOL Converter" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="21.09"> 1 <tool id="sbol_converter" name="SBOL Converter" version="@TOOL_VERSION@+galaxy@VERSION_SUFFIX@" profile="21.09" license="MIT">
2 <description>Convert between SBOL3 and other genetic design formats</description> 2 <description>Convert between SBOL3 and other genetic design formats</description>
3 <macros> 3 <macros>
4 <token name="@VERSION_SUFFIX@">0</token> 4 <token name="@VERSION_SUFFIX@">0</token>
5 <token name="@TOOL_VERSION@">1.0a16</token> 5 <token name="@TOOL_VERSION@">1.0a16</token>
6 </macros> 6 </macros>
91 <param name="type" value="SBOL2 to SBOL3"/> 91 <param name="type" value="SBOL2 to SBOL3"/>
92 </conditional> 92 </conditional>
93 <param name="sbol2_input" value="BASIC_construct_A1_sbol2_input.xml" /> 93 <param name="sbol2_input" value="BASIC_construct_A1_sbol2_input.xml" />
94 <output name="output" file="BASIC_construct_A1_sbol3_output.nt" ftype="nt" compare="diff"/> 94 <output name="output" file="BASIC_construct_A1_sbol3_output.nt" ftype="nt" compare="diff"/>
95 </test> 95 </test>
96
97 <test> 96 <test>
98 <!-- test 2: check if identical outputs are produced sbol3 to genbank--> 97 <!-- test 2: check if identical outputs are produced sbol3 to genbank-->
99 <conditional name="convert_type"> 98 <conditional name="convert_type">
100 <param name="type" value="SBOL3 to GENBANK"/> 99 <param name="type" value="SBOL3 to GENBANK"/>
101 </conditional> 100 </conditional>
117 </output> 116 </output>
118 </test> 117 </test>
119 </tests> 118 </tests>
120 <help><![CDATA[ 119 <help><![CDATA[
121 SBOL Converter 120 SBOL Converter
122 ================ 121 ==============
123 122
124 Convert between SBOL3 and other genetic design formats. 123 Convert between SBOL3 and other genetic design formats.
125 124
126 Input 125 Input
127 ----- 126 -----
130 * **Namespace URL**\ : Namespace URL, required for conversions from GenBank or from Fasta. Default=https://synbiohub.org/public/igem" 129 * **Namespace URL**\ : Namespace URL, required for conversions from GenBank or from Fasta. Default=https://synbiohub.org/public/igem"
131 130
132 Output 131 Output
133 ------ 132 ------
134 * **OUTPUT_FILE**\ : SBOL2 or SBOL3 or GENBANK or FASTA output file. 133 * **OUTPUT_FILE**\ : SBOL2 or SBOL3 or GENBANK or FASTA output file.
135
136 Project Links
137 ------------------
138 * `GitHub <https://github.com/SynBioDex/SBOL-utilities>`_
139
140 License
141 -------
142 * `MIT <https://github.com/SynBioDex/SBOL-utilities/blob/develop/LICENSE.txt>`_
143 ]]></help> 134 ]]></help>
135 <creator>
136 <organization name="BioRetroSynth" url="https://github.com/brsynth"/>
137 </creator>
138 <citations>
139 <citation type="doi">10.1021/acssynbio.1c00188</citation>
140 </citations>
144 </tool> 141 </tool>