# HG changeset patch # User tduigou # Date 1663249215 0 # Node ID 38a0feb2e79d274c0df0b9407cfa0f5324919fd0 planemo upload commit f40274f6b9f6a15eb4022aab21286d4c96cd8475-dirty diff -r 000000000000 -r 38a0feb2e79d sbol_converter.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/sbol_converter.xml Thu Sep 15 13:40:15 2022 +0000 @@ -0,0 +1,144 @@ + + Convert between SBOL3 and other genetic design formats + + 0 + 1.0a16 + + + sbol-utilities + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + + `_ + +License +------- +* `MIT `_ + ]]> + \ No newline at end of file diff -r 000000000000 -r 38a0feb2e79d test-data/BASIC_construct_A1_sbol2_input.xml --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/BASIC_construct_A1_sbol2_input.xml Thu Sep 15 13:40:15 2022 +0000 @@ -0,0 +1,339 @@ + + + + LMS + 1 + + + + + + BASIC_SEVA_37_CmR_p15A_1 + 1 + + + + + + + + + + 1 + LMP + + + + + + + + 1 + PJ23119_BASIC + + + U1_RBS1 + + 1 + + + + + + 1 + + P21684 + + + + + + + + U2_RBS1 + + 1 + + + + + + 1 + + + P21683 + + + + U3_RBS2 + + + 1 + + + + + + + + 1 + P21685 + + + + + + + 1 + + + constraint_2 + + + + + + P21685_0 + 1 + + + + + + + + + + + 1 + BASIC_SEVA_37_CmR_p15A_1_0 + + + + + + LMS_0 + + + 1 + + + + + U1_RBS1_0 + 1 + + + + + + 1 + + + + + P21684_0 + + 1 + + + + + + 1 + + + constraint_7 + + + + + + + constraint_0 + + 1 + + + + + + + + 1 + + + U2_RBS1_0 + + + + BASIC_construct_A1 + + + + + 1 + PJ23119_BASIC_0 + + + + + + constraint_1 + 1 + + + + + + + + + constraint_8 + + + + 1 + + + + + + 1 + + + LMP_0 + + + + + + + + 1 + U3_RBS2_0 + + + + + + + + 1 + P21683_0 + + + + + + + + + + constraint_5 + 1 + + + + + + + constraint_3 + 1 + + + + + + + 1 + + + constraint_4 + + + + + + + + + 1 + + + constraint_6 + + + + + + + LMS + 1 + + + + + + BASIC_SEVA_37_CmR_p15A_1 + + + 1 + + + + + 1 + LMP + + + + 1 + + PJ23119_BASIC + + + + + U1_RBS1 + + 1 + + + + + P21684 + atgc + + + 1 + + + + + 1 + + U2_RBS1 + + + + P21683 + + atgc + 1 + + + + U3_RBS2 + + 1 + + + + P21685 + atgc + 1 + + + + diff -r 000000000000 -r 38a0feb2e79d test-data/BASIC_construct_A1_sbol3_output.nt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/BASIC_construct_A1_sbol3_output.nt Thu Sep 15 13:40:15 2022 +0000 @@ -0,0 +1,207 @@ + "BASIC_SEVA_37_CmR_p15A_1" . + . + . + . + . + . + "1" . + . + "BASIC_SEVA_37_CmR_p15A_1_0" . + . + . + "1" . + . + "LMP_0" . + . + . + "1" . + . + "LMS_0" . + . + . + "1" . + . + "P21683_0" . + . + . + "1" . + . + "P21684_0" . + . + . + "1" . + . + "P21685_0" . + . + . + "1" . + . + "PJ23119_BASIC_0" . + . + . + "1" . + . + "U1_RBS1_0" . + . + . + "1" . + . + "U2_RBS1_0" . + . + . + "1" . + . + "U3_RBS2_0" . + . + . + "1" . + . + "BASIC_construct_A1" . + . + . + . + . + . + . + . + . + . + . + . + . + . + . + "1" . + . + "LMP" . + . + . + . + . + . + "1" . + . + "LMS" . + . + . + . + . + . + "1" . + . + "P21683" . + . + . + . + . + . + "1" . + . + "P21684" . + . + . + . + . + . + "1" . + . + "P21685" . + . + . + . + . + . + "1" . + . + "PJ23119_BASIC" . + . + . + . + . + . + "1" . + . + "U1_RBS1" . + . + . + . + . + . + "1" . + . + "U2_RBS1" . + . + . + . + . + . + "1" . + . + "U3_RBS2" . + . + . + . + . + . + "1" . + . + "BASIC_SEVA_37_CmR_p15A_1" . + "" . + . + . + "1" . + . + "LMP" . + "" . + . + . + "1" . + . + "LMS" . + "" . + . + . + "1" . + . + "P21683" . + "atgc" . + . + . + "1" . + . + "P21684" . + "atgc" . + . + . + "1" . + . + "P21685" . + "atgc" . + . + . + "1" . + . + "PJ23119_BASIC" . + "" . + . + . + "1" . + . + "U1_RBS1" . + "" . + . + . + "1" . + . + "U2_RBS1" . + "" . + . + . + "1" . + . + "U3_RBS2" . + "" . + . + . + "1" . + . diff -r 000000000000 -r 38a0feb2e79d test-data/BBa_J23101.gb --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/BBa_J23101.gb Thu Sep 15 13:40:15 2022 +0000 @@ -0,0 +1,12 @@ +LOCUS BBa_J23101 35 bp DNA linear UNK 01-JAN-1980 +DEFINITION constitutive promoter family member. +ACCESSION BBa_J23101 +VERSION BBa_J23101.1 +KEYWORDS . +SOURCE . + ORGANISM . + . +FEATURES Location/Qualifiers +ORIGIN + 1 tttacagcta gctcagtcct aggtattatg ctagc +// diff -r 000000000000 -r 38a0feb2e79d test-data/BBa_J23101.nt --- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/test-data/BBa_J23101.nt Thu Sep 15 13:40:15 2022 +0000 @@ -0,0 +1,60 @@ + + "John Anderson" . + "2006-08-03T11:00:00Z" . + "2015-08-31T04:08:40Z" . + "constitutive promoter family member" . + "BBa_J23101" . + . + . + "BBa_J23101" . + . + . + . + . + "1" . + "false" . + "true" . + . + "_52_" . + "0" . + "483" . + "95" . + "Released HQ 2013" . + "In stock" . + . + "true" . + "later" . + "N/A" . + "later" . + . + . + "true" . + . + . + . + . + "BBa_J23101_sequence" . + "tttacagctagctcagtcctaggtattatgctagc" . + . + . + "1" . + . + . + . + . + . + . + "Chris J. Myers" . + "James Alastair McLaughlin" . + "Conversion of the iGEM parts registry to SBOL2.1" . + "iGEM to SBOL conversion" . + . + "igem2sbol" . + . + "1" . + . + . + . + . + . + "2017-03-06T15:00:00+00:00" .