Mercurial > repos > tduigou > straindesign_analyzing_model
annotate test-data/butanol.xml @ 2:9a741be08e6f draft default tip
planemo upload for repository https://github.com/brsynth/straindesign commit 628dbf7f95517f13542059ac4a9de58da440f1c6
author | tduigou |
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date | Tue, 23 Jul 2024 19:26:16 +0000 |
parents | b86c4ac05aab |
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rev | line source |
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b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
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1 <?xml version="1.0" encoding="UTF-8"?> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
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2 <sbml xmlns="http://www.sbml.org/sbml/level3/version1/core" xmlns:groups="http://www.sbml.org/sbml/level3/version1/groups/version1" xmlns:fbc="http://www.sbml.org/sbml/level3/version1/fbc/version2" level="3" version="1" groups:required="false" fbc:required="false"> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
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changeset
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3 <model metaid="meta_butanol" id="butanol" fbc:strict="true"> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
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changeset
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4 <listOfUnitDefinitions> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
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changeset
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5 <unitDefinition id="mmol_per_gDW_per_hr"> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
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changeset
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6 <listOfUnits> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
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7 <unit kind="mole" exponent="1" scale="-3" multiplier="1"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
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8 <unit kind="gram" exponent="-1" scale="0" multiplier="1"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
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9 <unit kind="second" exponent="-1" scale="0" multiplier="3600"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
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10 </listOfUnits> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
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changeset
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11 </unitDefinition> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
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changeset
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12 </listOfUnitDefinitions> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
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changeset
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13 <fbc:listOfObjectives fbc:activeObjective="obj"> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
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14 <fbc:objective fbc:id="obj" fbc:type="maximize"> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
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changeset
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15 <fbc:listOfFluxObjectives> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
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16 <fbc:fluxObjective fbc:reaction="R_EX_1btol_e" fbc:coefficient="0.5"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
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17 </fbc:listOfFluxObjectives> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
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changeset
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18 </fbc:objective> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
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changeset
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19 </fbc:listOfObjectives> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
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changeset
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20 <listOfCompartments> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
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21 <compartment id="c" name="cytosol" constant="true"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
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changeset
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22 <compartment id="p" name="periplasm" constant="true"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
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changeset
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23 <compartment id="e" name="extracellular space" constant="true"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
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changeset
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24 </listOfCompartments> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
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changeset
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25 <listOfSpecies> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
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26 <species metaid="meta_M_co2_e" sboTerm="SBO:0000247" id="M_co2_e" name="CO2 CO2" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="CO2"> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
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changeset
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27 <annotation> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
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28 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/"> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
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29 <rdf:Description rdf:about="#meta_M_co2_e"> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
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changeset
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30 <bqbiol:is> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
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changeset
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31 <rdf:Bag> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
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32 <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/co2"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
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33 <rdf:li rdf:resource="https://identifiers.org/biocyc/META:CARBON-DIOXIDE"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
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34 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:23011"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
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35 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:3283"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
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changeset
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36 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:48829"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
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37 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16526"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
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38 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:13283"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
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39 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:13285"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
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40 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:13284"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
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41 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:13282"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
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42 <rdf:li rdf:resource="https://identifiers.org/envipath/650babc9-9d68-4b73-9332-11972ca26f7b/compound/2ec3da94-5f50-4525-81b1-5607c5c7a3d3"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
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43 <rdf:li rdf:resource="https://identifiers.org/envipath/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/05f60af4-0a3f-4ead-9a29-33bb0f123379"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
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44 <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB01967"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
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45 <rdf:li rdf:resource="https://identifiers.org/inchi_key/CURLTUGMZLYLDI-UHFFFAOYSA-N"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
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46 <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00011"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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parents:
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47 <rdf:li rdf:resource="https://identifiers.org/kegg.drug/D00004"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
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48 <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM13"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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parents:
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49 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/29376"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
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50 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/5668565"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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parents:
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51 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/189480"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
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52 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/1132345"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
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53 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/113528"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
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54 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/1237009"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
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55 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/159751"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
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56 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/389536"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
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57 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/159942"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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parents:
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58 <rdf:li rdf:resource="https://identifiers.org/sabiork/1266"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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parents:
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59 <rdf:li rdf:resource="https://identifiers.org/seed.compound/cpd00011"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
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60 </rdf:Bag> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
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61 </bqbiol:is> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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parents:
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62 </rdf:Description> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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parents:
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63 </rdf:RDF> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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parents:
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64 </annotation> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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parents:
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65 </species> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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parents:
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66 <species metaid="meta_M_glc__D_e" sboTerm="SBO:0000247" id="M_glc__D_e" name="D-Glucose" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C6H12O6"> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
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67 <annotation> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
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68 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/"> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
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69 <rdf:Description rdf:about="#meta_M_glc__D_e"> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
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70 <bqbiol:is> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
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71 <rdf:Bag> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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parents:
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72 <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/glc__D"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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73 <rdf:li rdf:resource="https://identifiers.org/biocyc/META:Glucopyranose"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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parents:
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74 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:12965"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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parents:
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75 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:20999"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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parents:
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76 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:4167"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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parents:
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77 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:17634"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
78 <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB00122"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
79 <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB06564"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
80 <rdf:li rdf:resource="https://identifiers.org/inchi_key/WQZGKKKJIJFFOK-GASJEMHNSA-N"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
81 <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00031"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
82 <rdf:li rdf:resource="https://identifiers.org/kegg.drug/D00009"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
83 <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM41"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
84 <rdf:li rdf:resource="https://identifiers.org/sabiork/1406"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
85 <rdf:li rdf:resource="https://identifiers.org/sabiork/1407"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
86 <rdf:li rdf:resource="https://identifiers.org/seed.compound/cpd26821"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
87 <rdf:li rdf:resource="https://identifiers.org/seed.compound/cpd00027"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
88 </rdf:Bag> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
89 </bqbiol:is> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
90 </rdf:Description> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
91 </rdf:RDF> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
92 </annotation> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
93 </species> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
94 <species metaid="meta_M_b2coa_c" sboTerm="SBO:0000247" id="M_b2coa_c" name="Crotonoyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-4" fbc:chemicalFormula="C25H36N7O17P3S"> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
95 <annotation> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
96 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/"> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
97 <rdf:Description rdf:about="#meta_M_b2coa_c"> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
98 <bqbiol:is> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
99 <rdf:Bag> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
100 <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/b2coa"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
101 <rdf:li rdf:resource="https://identifiers.org/biocyc/META:CROTONYL-COA"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
102 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:3928"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
103 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:11531"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
104 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:15473"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
105 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:36926"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
106 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:57332"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
107 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:23408"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
108 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:14031"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
109 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:14032"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
110 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:13921"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
111 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:41612"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
112 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:58669"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
113 <rdf:li rdf:resource="https://identifiers.org/envipath/32de3cf4-e3e6-4168-956e-32fa5ddb0ce1/compound/c0e5f008-6d8b-4b94-a265-03d19ff197f4"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
114 <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB62466"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
115 <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB02009"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
116 <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB59627"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
117 <rdf:li rdf:resource="https://identifiers.org/inchi_key/KFWWCMJSYSSPSK-PAXLJYGASA-J"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
118 <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00877"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
119 <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA07050307"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
120 <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM214"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
121 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/71045"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
122 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/77313"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
123 <rdf:li rdf:resource="https://identifiers.org/sabiork/2174"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
124 <rdf:li rdf:resource="https://identifiers.org/seed.compound/cpd00650"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
125 </rdf:Bag> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
126 </bqbiol:is> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
127 </rdf:Description> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
128 </rdf:RDF> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
129 </annotation> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
130 </species> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
131 <species metaid="meta_M_btcoa_c" sboTerm="SBO:0000247" id="M_btcoa_c" name="Gamma-butyrobetainyl-CoA" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-3" fbc:chemicalFormula="C28H46N8O17P3S"> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
132 <annotation> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
133 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/"> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
134 <rdf:Description rdf:about="#meta_M_btcoa_c"> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
135 <bqbiol:is> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
136 <rdf:Bag> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
137 <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/btcoa"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
138 <rdf:li rdf:resource="https://identifiers.org/biocyc/META:GAMMA-BUTYROBETAINYL-COA"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
139 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:61513"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
140 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:61517"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
141 <rdf:li rdf:resource="https://identifiers.org/inchi_key/QAMRRBGWSPTAEJ-SVHODSNWSA-K"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
142 <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C20749"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
143 <rdf:li rdf:resource="https://identifiers.org/lipidmaps/LMFA07050321"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
144 <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM5762"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
145 <rdf:li rdf:resource="https://identifiers.org/seed.compound/cpd15412"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
146 </rdf:Bag> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
147 </bqbiol:is> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
148 </rdf:Description> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
149 </rdf:RDF> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
150 </annotation> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
151 </species> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
152 <species metaid="meta_M_btal_c" sboTerm="SBO:0000247" id="M_btal_c" name="Butanal C4H8O" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="0" fbc:chemicalFormula="C4H8O"> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
153 <annotation> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
154 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/"> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
155 <rdf:Description rdf:about="#meta_M_btal_c"> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
156 <bqbiol:is> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
157 <rdf:Bag> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
158 <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/btal"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
159 <rdf:li rdf:resource="https://identifiers.org/biocyc/META:BUTANAL"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
160 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:22938"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
161 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:3233"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
162 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:15743"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
163 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:13923"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
164 <rdf:li rdf:resource="https://identifiers.org/envipath/650babc9-9d68-4b73-9332-11972ca26f7b/compound/242f8a4e-2a91-4c5f-a129-d044d115b969"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
165 <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB03543"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
166 <rdf:li rdf:resource="https://identifiers.org/inchi_key/ZTQSAGDEMFDKMZ-UHFFFAOYSA-N"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
167 <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C01412"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
168 <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM1017"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
169 <rdf:li rdf:resource="https://identifiers.org/sabiork/2281"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
170 <rdf:li rdf:resource="https://identifiers.org/seed.compound/cpd01011"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
171 </rdf:Bag> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
172 </bqbiol:is> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
173 </rdf:Description> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
174 </rdf:RDF> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
175 </annotation> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
176 </species> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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parents:
diff
changeset
|
177 <species metaid="meta_M_nad_c" sboTerm="SBO:0000247" id="M_nad_c" name="Deamino-NAD+" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H24N6O15P2"> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
178 <annotation> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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parents:
diff
changeset
|
179 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/"> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
180 <rdf:Description rdf:about="#meta_M_nad_c"> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
181 <bqbiol:is> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
182 <rdf:Bag> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
183 <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nad"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
184 <rdf:li rdf:resource="https://identifiers.org/biocyc/META:DEAMIDO-NAD"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
185 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:14104"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
186 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:58437"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
187 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:14103"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
188 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:4340"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
189 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:14105"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
190 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:18304"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
191 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:23567"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
192 <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB01179"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
193 <rdf:li rdf:resource="https://identifiers.org/inchi_key/SENPVEZBRZQVST-HISDBWNOSA-L"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
194 <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00857"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
195 <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM309"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
196 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/8938090"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
197 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/200499"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
198 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/197256"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
199 <rdf:li rdf:resource="https://identifiers.org/sabiork/1349"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
200 <rdf:li rdf:resource="https://identifiers.org/seed.compound/cpd00638"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
201 </rdf:Bag> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
202 </bqbiol:is> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
203 </rdf:Description> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
204 </rdf:RDF> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
205 </annotation> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
206 </species> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
207 <species metaid="meta_M_nadh_c" sboTerm="SBO:0000247" id="M_nadh_c" name="Nicotinamide adenine dinucleotide - reduced" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="-2" fbc:chemicalFormula="C21H27N7O14P2"> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
208 <annotation> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
209 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/"> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
210 <rdf:Description rdf:about="#meta_M_nadh_c"> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
211 <bqbiol:is> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
212 <rdf:Bag> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
213 <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/nadh"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
214 <rdf:li rdf:resource="https://identifiers.org/biocyc/META:NADH"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
215 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:13395"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
216 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:21902"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
217 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:7423"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
218 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:44216"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
219 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:57945"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
220 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:16908"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
221 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:13396"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
222 <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB01487"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
223 <rdf:li rdf:resource="https://identifiers.org/inchi_key/BOPGDPNILDQYTO-NNYOXOHSSA-L"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
224 <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00004"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
225 <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM10"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
226 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/192305"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
227 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/73473"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
228 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/29362"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
229 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/194697"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
230 <rdf:li rdf:resource="https://identifiers.org/sabiork/38"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
231 <rdf:li rdf:resource="https://identifiers.org/seed.compound/cpd00004"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
232 </rdf:Bag> |
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planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
233 </bqbiol:is> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
234 </rdf:Description> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
235 </rdf:RDF> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
236 </annotation> |
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planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
237 </species> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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parents:
diff
changeset
|
238 <species metaid="meta_M_h_c" sboTerm="SBO:0000247" id="M_h_c" name="H+" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="H"> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
239 <annotation> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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changeset
|
240 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/"> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
241 <rdf:Description rdf:about="#meta_M_h_c"> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
242 <bqbiol:is> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
243 <rdf:Bag> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
244 <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/h"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
245 <rdf:li rdf:resource="https://identifiers.org/biocyc/META:PROTON"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
246 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:5584"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
247 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:13357"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
248 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:15378"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
249 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:10744"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
250 <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB59597"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
251 <rdf:li rdf:resource="https://identifiers.org/inchi_key/GPRLSGONYQIRFK-UHFFFAOYSA-N"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
252 <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00080"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
253 <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM1"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
254 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/2000349"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
255 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/425978"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
256 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/74722"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
257 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/428040"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
258 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/427899"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
259 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/428548"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
260 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/156540"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
261 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/70106"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
262 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/425969"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
263 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/1132304"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
264 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/5668577"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
265 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/1470067"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
266 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/163953"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
267 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/193465"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
268 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/113529"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
269 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/351626"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
270 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/425999"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
271 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/194688"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
272 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/374900"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
273 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/2872447"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
274 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/372511"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
275 <rdf:li rdf:resource="https://identifiers.org/sabiork/39"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
276 <rdf:li rdf:resource="https://identifiers.org/seed.compound/cpd00067"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
277 </rdf:Bag> |
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planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
278 </bqbiol:is> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
279 </rdf:Description> |
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planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
280 </rdf:RDF> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
281 </annotation> |
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planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
282 </species> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
283 <species metaid="meta_M_h_e" sboTerm="SBO:0000247" id="M_h_e" name="H+" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="H"> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
284 <annotation> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
285 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/"> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
286 <rdf:Description rdf:about="#meta_M_h_e"> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
287 <bqbiol:is> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
288 <rdf:Bag> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
289 <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/h"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
290 <rdf:li rdf:resource="https://identifiers.org/biocyc/META:PROTON"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
291 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:5584"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
292 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:13357"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
293 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:15378"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
294 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:10744"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
295 <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB59597"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
296 <rdf:li rdf:resource="https://identifiers.org/inchi_key/GPRLSGONYQIRFK-UHFFFAOYSA-N"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
297 <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00080"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
298 <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM1"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
299 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/2000349"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
300 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/425978"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
301 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/74722"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
302 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/428040"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
303 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/427899"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
304 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/428548"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
305 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/156540"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
306 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/70106"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
307 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/425969"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
308 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/1132304"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
309 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/5668577"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
310 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/1470067"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
311 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/163953"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
312 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/193465"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
313 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/113529"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
314 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/351626"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
315 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/425999"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
316 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/194688"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
317 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/374900"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
318 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/2872447"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
319 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/372511"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
320 <rdf:li rdf:resource="https://identifiers.org/sabiork/39"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
321 <rdf:li rdf:resource="https://identifiers.org/seed.compound/cpd00067"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
322 </rdf:Bag> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
323 </bqbiol:is> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
324 </rdf:Description> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
325 </rdf:RDF> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
326 </annotation> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
327 </species> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
328 <species metaid="meta_M_h_p" sboTerm="SBO:0000247" id="M_h_p" name="H+" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:charge="1" fbc:chemicalFormula="H"> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
329 <annotation> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
330 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/"> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
331 <rdf:Description rdf:about="#meta_M_h_p"> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
332 <bqbiol:is> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
333 <rdf:Bag> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
334 <rdf:li rdf:resource="https://identifiers.org/bigg.metabolite/h"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
335 <rdf:li rdf:resource="https://identifiers.org/biocyc/META:PROTON"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
336 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:5584"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
337 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:13357"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
338 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:15378"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
339 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:10744"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
340 <rdf:li rdf:resource="https://identifiers.org/hmdb/HMDB59597"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
341 <rdf:li rdf:resource="https://identifiers.org/inchi_key/GPRLSGONYQIRFK-UHFFFAOYSA-N"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
342 <rdf:li rdf:resource="https://identifiers.org/kegg.compound/C00080"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
343 <rdf:li rdf:resource="https://identifiers.org/metanetx.chemical/MNXM1"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
344 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/2000349"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
345 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/425978"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
346 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/74722"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
347 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/428040"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
348 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/427899"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
349 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/428548"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
350 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/156540"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
351 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/70106"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
352 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/425969"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
353 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/1132304"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
354 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/5668577"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
355 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/1470067"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
356 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/163953"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
357 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/193465"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
358 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/113529"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
359 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/351626"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
360 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/425999"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
361 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/194688"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
362 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/374900"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
363 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/2872447"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
364 <rdf:li rdf:resource="https://identifiers.org/reactome.compound/372511"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
365 <rdf:li rdf:resource="https://identifiers.org/sabiork/39"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
366 <rdf:li rdf:resource="https://identifiers.org/seed.compound/cpd00067"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
367 </rdf:Bag> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
368 </bqbiol:is> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
369 </rdf:Description> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
370 </rdf:RDF> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
371 </annotation> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
372 </species> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
373 <species metaid="meta_M_1btol_c" id="M_1btol_c" name="butan1ol" compartment="c" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C4H10O"> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
374 <annotation> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
375 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/"> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
376 <rdf:Description rdf:about="#meta_M_1btol_c"> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
377 <bqbiol:is> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
378 <rdf:Bag> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
379 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:22936"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
380 </rdf:Bag> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
381 </bqbiol:is> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
382 </rdf:Description> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
383 </rdf:RDF> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
384 </annotation> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
385 </species> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
386 <species metaid="meta_M_1btol_p" id="M_1btol_p" name="butan1ol" compartment="p" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C4H10O"> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
387 <annotation> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
388 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/"> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
389 <rdf:Description rdf:about="#meta_M_1btol_p"> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
390 <bqbiol:is> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
391 <rdf:Bag> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
392 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:22936"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
393 </rdf:Bag> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
394 </bqbiol:is> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
395 </rdf:Description> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
396 </rdf:RDF> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
397 </annotation> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
398 </species> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
399 <species metaid="meta_M_1btol_e" id="M_1btol_e" name="butan1ol" compartment="e" hasOnlySubstanceUnits="false" boundaryCondition="false" constant="false" fbc:chemicalFormula="C4H10O"> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
400 <annotation> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
401 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:dcterms="http://purl.org/dc/terms/" xmlns:vCard="http://www.w3.org/2001/vcard-rdf/3.0#" xmlns:vCard4="http://www.w3.org/2006/vcard/ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/" xmlns:bqmodel="http://biomodels.net/model-qualifiers/"> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
402 <rdf:Description rdf:about="#meta_M_1btol_e"> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
403 <bqbiol:is> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
404 <rdf:Bag> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
405 <rdf:li rdf:resource="https://identifiers.org/chebi/CHEBI:22936"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
406 </rdf:Bag> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
407 </bqbiol:is> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
408 </rdf:Description> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
409 </rdf:RDF> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
410 </annotation> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
411 </species> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
412 </listOfSpecies> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
413 <listOfParameters> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
414 <parameter constant="true" id="cobra_default_lb" name="cobra default - lb" sboTerm="SBO:0000626" units="mmol_per_gDW_per_hr" value="-1000"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
415 <parameter constant="true" id="cobra_default_ub" name="cobra default - ub" sboTerm="SBO:0000626" units="mmol_per_gDW_per_hr" value="1000"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
416 <parameter constant="true" id="cobra_0_bound" name="cobra 0 - bound" sboTerm="SBO:0000625" units="mmol_per_gDW_per_hr" value="0"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
417 </listOfParameters> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
418 <listOfReactions> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
419 <reaction metaid="meta_R_EX_1btol_e" sboTerm="SBO:0000627" id="R_EX_1btol_e" name="butan1ol exchange" reversible="true" fast="false" fbc:lowerFluxBound="cobra_default_lb" fbc:upperFluxBound="cobra_default_ub"> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
420 <listOfReactants> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
421 <speciesReference species="M_1btol_e" stoichiometry="1" constant="true"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
422 </listOfReactants> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
423 </reaction> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
424 <reaction id="R_ButCoaDeh" name="Butyryl-CoA dehydrogenase" reversible="false" fast="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="cobra_default_ub"> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
425 <listOfReactants> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
426 <speciesReference species="M_b2coa_c" stoichiometry="1" constant="true"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
427 <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
428 <speciesReference species="M_h_c" stoichiometry="1" constant="true"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
429 </listOfReactants> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
430 <listOfProducts> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
431 <speciesReference species="M_btcoa_c" stoichiometry="1" constant="true"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
432 <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
433 </listOfProducts> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
434 </reaction> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
435 <reaction id="R_ButanalDeh" name="Butanal dehydrogenase" reversible="false" fast="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="cobra_default_ub"> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
436 <listOfReactants> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
437 <speciesReference species="M_btcoa_c" stoichiometry="1" constant="true"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
438 <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
439 <speciesReference species="M_h_c" stoichiometry="1" constant="true"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
440 </listOfReactants> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
441 <listOfProducts> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
442 <speciesReference species="M_btal_c" stoichiometry="1" constant="true"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
443 <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
444 </listOfProducts> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
445 </reaction> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
446 <reaction id="R_ButanolDeh" name="Butanol dehydrogenase" reversible="false" fast="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="cobra_default_ub"> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
447 <listOfReactants> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
448 <speciesReference species="M_btal_c" stoichiometry="1" constant="true"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
449 <speciesReference species="M_nadh_c" stoichiometry="1" constant="true"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
450 <speciesReference species="M_h_c" stoichiometry="1" constant="true"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
451 </listOfReactants> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
452 <listOfProducts> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
453 <speciesReference species="M_1btol_c" stoichiometry="1" constant="true"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
454 <speciesReference species="M_nad_c" stoichiometry="1" constant="true"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
455 </listOfProducts> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
456 </reaction> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
457 <reaction id="R_ButOlTrP" name="1-Butanol transporter (periplasm)" reversible="false" fast="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="cobra_default_ub"> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
458 <listOfReactants> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
459 <speciesReference species="M_1btol_c" stoichiometry="1" constant="true"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
460 <speciesReference species="M_h_c" stoichiometry="1" constant="true"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
461 </listOfReactants> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
462 <listOfProducts> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
463 <speciesReference species="M_1btol_p" stoichiometry="1" constant="true"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
464 <speciesReference species="M_h_p" stoichiometry="1" constant="true"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
465 </listOfProducts> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
466 </reaction> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
467 <reaction id="R_ButOlTrE" name="1-Butanol transporter (extracellular)" reversible="false" fast="false" fbc:lowerFluxBound="cobra_0_bound" fbc:upperFluxBound="cobra_default_ub"> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
468 <listOfReactants> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
469 <speciesReference species="M_1btol_p" stoichiometry="1" constant="true"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
changeset
|
470 </listOfReactants> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
tduigou
parents:
diff
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471 <listOfProducts> |
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planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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472 <speciesReference species="M_1btol_e" stoichiometry="1" constant="true"/> |
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planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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473 </listOfProducts> |
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planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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474 </reaction> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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475 </listOfReactions> |
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planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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476 <groups:listOfGroups> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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477 <groups:group metaid="meta_rp_pathway" groups:id="rp_pathway" groups:kind="collection"> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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478 <annotation> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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479 <rdf:RDF xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns#" xmlns:bqbiol="http://biomodels.net/biology-qualifiers/"> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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480 <rdf:BRSynth rdf:about="meta_rp_pathway"> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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481 <brsynth:brsynth xmlns:brsynth="http://brsynth.eu"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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482 </rdf:BRSynth> |
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planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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483 </rdf:RDF> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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484 </annotation> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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485 <groups:listOfMembers> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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486 <groups:member groups:idRef="R_ButCoaDeh"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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487 <groups:member groups:idRef="R_ButanalDeh"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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488 <groups:member groups:idRef="R_ButanolDeh"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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489 <groups:member groups:idRef="R_ButOlTrP"/> |
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planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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490 <groups:member groups:idRef="R_ButOlTrE"/> |
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planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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491 <groups:member groups:idRef="R_EX_1btol_e"/> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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492 </groups:listOfMembers> |
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planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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493 </groups:group> |
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planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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494 </groups:listOfGroups> |
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planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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495 </model> |
b86c4ac05aab
planemo upload for repository https://github.com/brsynth/straindesign commit 38e681e9ebc7bb75ea44f314b48761bf25403420
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496 </sbml> |