Mercurial > repos > testtool > annotate_peak
comparison annotate_peak/annotatePeak.xml @ 12:54e19bceff70 draft
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author | testtool |
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date | Thu, 16 Mar 2017 07:21:37 -0400 |
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children | 6a9b9694acbf |
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11:5e0ac671c613 | 12:54e19bceff70 |
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1 <tool id="AP" name="annotatePeak" version="1.16.2"> | |
2 <requirements> | |
3 <requirement type="package" version="3.2.1">R</requirement> | |
4 </requirements> | |
5 <stdio> | |
6 <exit_code range="1:" /> | |
7 </stdio> | |
8 <command> Rscript $__tool_directory__/annotatePeak.R "$DMR" "$annoPeakTable"</command> | |
9 <inputs> | |
10 <param optional="false" format="bed" name="DMR" type="data" value="" help="Bumphunter peaks." label="[required] file"> | |
11 <validator type="empty_field" message="This field is required."/> | |
12 </param> | |
13 </inputs> | |
14 <outputs> | |
15 <data format="csv" name="annoPeakTable" label="peakAnno.csv"/> | |
16 </outputs> | |
17 <tests> | |
18 <test> | |
19 <param name="test"> | |
20 <element name="test-data"> | |
21 <collection type="data"> | |
22 <element name="DMR" value="test-data/DMR.bed"/> | |
23 </collection> | |
24 </element> | |
25 </param> | |
26 <output format="csv" name="annoPeakTable" label="test-data/annoPeakTable.csv"/> | |
27 </test> | |
28 </tests> | |
29 <help> | |
30 **Description** | |
31 </help> | |
32 <citations> | |
33 DMR | |
34 </citations> | |
35 </tool> |