Mercurial > repos > testtool > find_dmr
comparison findDMR/findDMR.xml @ 1:3c3eb51a6414 draft
Uploaded
| author | testtool |
|---|---|
| date | Mon, 06 Feb 2017 06:29:55 -0500 |
| parents | ca66a1487d4a |
| children | f13c6d0d664a |
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| 0:ca66a1487d4a | 1:3c3eb51a6414 |
|---|---|
| 1 <tool id="DMR" name="findDMR" version="1.16.2"> | 1 <tool id="DMR" name="findDMR" version="1.16.2"> |
| 2 <requirements> | 2 <requirements> |
| 3 <package name="methyldata_1_16_2" version="1.16.2"> | 3 <tool_dependency> |
| 4 <repository name="methyldata_1_16_2" owner="testtool" prior_installation_required="True" /> | 4 <package name="R" version="3.2.1"> |
| 5 </package> | 5 <repository changeset_revision="d0bf97420fb5" name="package_r_3_2_1" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> |
| 6 </package> | |
| 7 </tool_dependency> | |
| 6 </requirements> | 8 </requirements> |
| 7 <stdio> | 9 <stdio> |
| 8 <exit_code range="1:" /> | 10 <exit_code range="1:" /> |
| 9 </stdio> | 11 </stdio> |
| 10 <command> Rscript $__tool_directory__/findDMR.R "$GSMTable" "$IlmnTable" "$gmTable" "$cutoff" "$clusterSize" "$DMR"</command> | 12 <command> Rscript $__tool_directory__/findDMR.R "$GSMTable" "$IlmnTable" "$gmTable" "$cutoff" "$clusterSize" "$DMR"</command> |