Mercurial > repos > testtool > find_dmr

diff findDMR/findDMR.xml @ 5:715d03e1fd83 draft

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Uploaded
author testtool
date Mon, 20 Mar 2017 06:51:59 -0400
parents 0d1957068766
children a0e3f4efb03f
line wrap: on
line diff
--- a/findDMR/findDMR.xml	Mon Feb 20 08:32:26 2017 -0500
+++ b/findDMR/findDMR.xml	Mon Mar 20 06:51:59 2017 -0400
@@ -10,13 +10,13 @@
 </stdio>
   <command> Rscript $__tool_directory__/findDMR.R "$GSMTable" "$platform" "$Data_Table" "$cutoff" "$clusterSize" "$DMR"</command>
   <inputs>
-    <param optional="false" format="csv" name="GSMTable" type="data" value="" help="GSM ID and phenotype table." label="[required] GSMTable">
+    <param optional="false" format="txt" name="GSMTable" type="data" value="" help="GSM ID and phenotype table." label="[required] GSMTable">
       <validator type="empty_field" message="This field is required."/>
     </param>
-     <param optional="false" format="csv" name="platform" type="data" value="" help="CG, CHR, BP table." label="[required] platform">
+     <param optional="false" format="txt" name="platform" type="data" value="" help="CG, CHR, BP table." label="[required] platform">
       <validator type="empty_field" message="This field is required."/>
     </param>
-     <param optional="false" format="csv" name="Data_Table" type="data" value="" help="Matrix of data." label="[required] Data_Table">
+     <param optional="false" format="txt" name="Data_Table" type="data" value="" help="Matrix of data." label="[required] Data_Table">
       <validator type="empty_field" message="This field is required."/>
     </param>
     <param name="cutoff" type="float" value=""
@@ -36,9 +36,9 @@
       <param name="test">
       <element name="test-data">
           <collection type="data">
-              <element name="GSMTable" value="test-data/input.csv"/>
-              <element name="platform" value="test-data/platform.csv"/>
-              <element name="Data_Table" value="test-data/Data_Table.csv"/>
+              <element name="GSMTable" value="test-data/input.txt"/>
+              <element name="platform" value="test-data/platform.txt"/>
+              <element name="Data_Table" value="test-data/Data_Table.txt"/>
               <element name="cutoff" value="0.2"/>
               <element name="clusterSize" value="2"/>
           </collection>