# HG changeset patch # User testtool # Date 1494516362 14400 # Node ID 24ac6f93cc3edec122e0687b1750d9c307203781 # Parent 7df2b7d793913e794727207b4fa7e8527cc91512 Uploaded diff -r 7df2b7d79391 -r 24ac6f93cc3e findDMR/findDMR.R --- a/findDMR/findDMR.R Thu May 11 11:15:33 2017 -0400 +++ b/findDMR/findDMR.R Thu May 11 11:26:02 2017 -0400 @@ -1,3 +1,7 @@ +require("BiocGenerics", quietly = TRUE) +require("data.table", quietly = TRUE) +require("bumphunter", quietly = TRUE) + args <- commandArgs(trailingOnly = TRUE) GSMTable = args[1] platform = args[2] @@ -28,7 +32,6 @@ DMRInfo <- data.table(DMRTable$chr, DMRTable$start, DMRTable$end) - write.table( DMRInfo, DMR,