view findSNPs/findSNPs.xml @ 2:15bb9a34d924 draft

author testtool
date Sun, 11 Jun 2017 11:49:04 -0400
children 3e5470e49ba5
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<?xml version="1.0" encoding="UTF-8"?>
<tool id="findSNPs" name="findSNPs" version="1.16.2">
<requirement type="package" version="1.20.0">bioconductor-minfi</requirement>
<exit_code range="1:" />
  <command> Rscript $__tool_directory__/findSNPs.R "$input" "$output" </command>
     <param name="input" type="RDdata" value="" label="Genomic Ratio Set" help="e.g. 'GRsetFromGEO tool output'"/>
    <data format="text" name="output" label="findSNPs.txt"/>
      <param name="test">
      <element name="test-data">
          <collection type="data">
                <element name="input" format="RData"  name="output" label="test-data/out.RData"> </element>
        <output type="data" format="text"  name="output" label="test-data/findSNPs.txt"/>
**What it does**
Function To Retrieve The Chromosome And The Position Of Each SNP On A Given Affymetrix SNP Array
GenomicRatioSet object
Text file containing information on which probes contains SNPs
<citation type="doi">10.1093/bioinformatics/btu049</citation>