annotate GRsetFromGEO/GRsetFromGEO.R @ 17:9c9e389abef6 draft

Uploaded
author testtool
date Wed, 12 Apr 2017 12:05:46 -0400
parents 0631845b906d
children 79cf43dbbf79
Ignore whitespace changes - Everywhere: Within whitespace: At end of lines:
rev   line source
12
0631845b906d Uploaded
testtool
parents:
diff changeset
1 require("minfi", quietly = TRUE)
0631845b906d Uploaded
testtool
parents:
diff changeset
2
0631845b906d Uploaded
testtool
parents:
diff changeset
3 options(warn = -1)
0631845b906d Uploaded
testtool
parents:
diff changeset
4 options("download.file.method"="wget")
0631845b906d Uploaded
testtool
parents:
diff changeset
5
0631845b906d Uploaded
testtool
parents:
diff changeset
6 args <- commandArgs(trailingOnly = TRUE)
0631845b906d Uploaded
testtool
parents:
diff changeset
7 GSE = args[1]
0631845b906d Uploaded
testtool
parents:
diff changeset
8 output = args[2]
0631845b906d Uploaded
testtool
parents:
diff changeset
9
0631845b906d Uploaded
testtool
parents:
diff changeset
10 GRset <- getGenomicRatioSetFromGEO(GSE)
0631845b906d Uploaded
testtool
parents:
diff changeset
11
0631845b906d Uploaded
testtool
parents:
diff changeset
12 save(GRset,file = output)