comparison GRsetFromGEO/GRsetFromGEO.R @ 29:118e636a5f95 draft

Uploaded
author testtool
date Thu, 13 Apr 2017 11:49:05 -0400
parents 3d281ad15b83
children be1ca0e7829b
comparison
equal deleted inserted replaced
28:3d281ad15b83 29:118e636a5f95
1 require("minfi", quietly = TRUE) 1 require("minfi", quietly = TRUE)
2
3 options(warn = -1)
4 options("download.file.method"="wget")
5 2
6 args <- commandArgs(trailingOnly = TRUE) 3 args <- commandArgs(trailingOnly = TRUE)
7 GSE = args[1] 4 GSE = args[1]
8 output = args[2] 5 output = args[2]
9 6
10 GRset <- getGenomicRatioSetFromGEO(GSE) 7 GRset <- getGenomicRatioSetFromGEO(GSE)
11 a<-"stefan"
12 write.table(a,output)
13 8
14 #save(GRset,file = output) 9 save(GRset,output)