Mercurial > repos > testtool > geo_data
comparison GRsetFromGEO/GRsetFromGEO.R @ 29:118e636a5f95 draft
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author | testtool |
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date | Thu, 13 Apr 2017 11:49:05 -0400 |
parents | 3d281ad15b83 |
children | be1ca0e7829b |
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28:3d281ad15b83 | 29:118e636a5f95 |
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1 require("minfi", quietly = TRUE) | 1 require("minfi", quietly = TRUE) |
2 | |
3 options(warn = -1) | |
4 options("download.file.method"="wget") | |
5 | 2 |
6 args <- commandArgs(trailingOnly = TRUE) | 3 args <- commandArgs(trailingOnly = TRUE) |
7 GSE = args[1] | 4 GSE = args[1] |
8 output = args[2] | 5 output = args[2] |
9 | 6 |
10 GRset <- getGenomicRatioSetFromGEO(GSE) | 7 GRset <- getGenomicRatioSetFromGEO(GSE) |
11 a<-"stefan" | |
12 write.table(a,output) | |
13 | 8 |
14 #save(GRset,file = output) | 9 save(GRset,output) |