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comparison GRsetFromGEO/GRsetFromGEO.R @ 40:234e990e8e1d draft

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Uploaded
author testtool
date Mon, 24 Apr 2017 09:45:39 -0400
parents c982fdb0e27d
children 4987433afb56
comparison
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39:925945cca45f 40:234e990e8e1d
1 require("minfi", quietly = TRUE) 1 require("minfi", quietly = TRUE)
2 require("BiocGenerics", quietly = TRUE)
3 require("data.table", quietly = TRUE)
4 require("GEOquery", quietly = TRUE) 2 require("GEOquery", quietly = TRUE)
5 require("rtracklayer", quietly = TRUE)
6 require("FDb.InfiniumMethylation.hg19", quietly = TRUE) 3 require("FDb.InfiniumMethylation.hg19", quietly = TRUE)
7 4
8 args <- commandArgs(trailingOnly = TRUE) 5 args <- commandArgs(trailingOnly = TRUE)
9 GSE = args[1] 6 GSE = args[1]
10 output = args[2] 7 output = args[2]