Mercurial > repos > testtool > geo_data
comparison tool_dependencies.xml @ 66:378b47ef4a14 draft
Uploaded
| author | testtool |
|---|---|
| date | Thu, 11 May 2017 07:14:30 -0400 |
| parents | |
| children |
comparison
equal
deleted
inserted
replaced
| 65:ad054b925eda | 66:378b47ef4a14 |
|---|---|
| 1 <?xml version="1.0"?> | |
| 2 <tool_dependency> | |
| 3 <package name="libcurl" version="7.35"> | |
| 4 <repository changeset_revision="0d934b13250c" name="package_libcurl_7_35" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> | |
| 5 </package> | |
| 6 <package name="R" version="3.2.1"> | |
| 7 <repository changeset_revision="d0bf97420fb5" name="package_r_3_2_1" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu" /> | |
| 8 </package> | |
| 9 <package name="450kdependency" version="0.0.1"> | |
| 10 <install version="1.0"> | |
| 11 <actions> | |
| 12 <action type="setup_r_environment"> | |
| 13 <repository changeset_revision="0d934b13250c" name="package_libcurl_7_35" owner="iuc" prior_installation_required="True" toolshed="https://toolshed.g2.bx.psu.edu"> | |
| 14 <package name="libcurl" version="7.35" /> | |
| 15 </repository> | |
| 16 <repository changeset_revision="d0bf97420fb5" name="package_r_3_2_1" owner="iuc" toolshed="https://toolshed.g2.bx.psu.edu"> | |
| 17 <package name="R" version="3.2.1" /> | |
| 18 </repository> | |
| 19 <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/BiocGenerics_0.16.1.tar.gz</package> | |
| 20 <package>http://www.bioconductor.org/packages/release/bioc/src/contrib/Biobase_2.36.1.tar.gz</package> | |
| 21 <package>https://cran.r-project.org/src/contrib/iterators_1.0.8.tar.gz</package> | |
| 22 <package>https://cran.r-project.org/src/contrib/foreach_1.4.3.tar.gz</package> | |
| 23 <package>https://cran.rstudio.com/src/contrib/locfit_1.5-9.1.tar.gz</package> | |
| 24 <package>https://cran.rstudio.com/src/contrib/matrixStats_0.52.2.tar.gz</package> | |
| 25 <package>http://bioconductor.org/packages/release/bioc/src/contrib/limma_3.32.2.tar.gz</package> | |
| 26 <package>https://cran.r-project.org/src/contrib/registry_0.3.tar.gz</package> | |
| 27 <package>https://cran.r-project.org/src/contrib/digest_0.6.12.tar.gz</package> | |
| 28 <package>https://cran.r-project.org/src/contrib/stringi_1.1.5.tar.gz</package> | |
| 29 <package>https://cran.r-project.org/src/contrib/magrittr_1.5.tar.gz</package> | |
| 30 <package>https://cran.r-project.org/src/contrib/stringr_1.2.0.tar.gz</package> | |
| 31 <package>https://cran.r-project.org/src/contrib/xtable_1.8-2.tar.gz</package> | |
| 32 <package>https://cran.r-project.org/src/contrib/pkgmaker_0.22.tar.gz</package> | |
| 33 <package>https://cran.r-project.org/src/contrib/rngtools_1.2.4.tar.gz</package> | |
| 34 <package>https://cran.r-project.org/src/contrib/doRNG_1.6.6.tar.gz</package> | |
| 35 <package>https://cran.r-project.org/src/contrib/DBI_0.6-1.tar.gz</package> | |
| 36 <package>https://cran.r-project.org/src/contrib/memoise_1.1.0.tar.gz</package> | |
| 37 <package>https://cran.r-project.org/src/contrib/Rcpp_0.12.10.tar.gz</package> | |
| 38 <package>https://cran.r-project.org/src/contrib/BH_1.62.0-1.tar.gz</package> | |
| 39 <package>https://cran.r-project.org/src/contrib/plogr_0.1-1.tar.gz</package> | |
| 40 <package>https://cran.r-project.org/src/contrib/RSQLite_1.1-2.tar.gz</package> | |
| 41 <package>https://cran.r-project.org/src/contrib/bitops_1.0-6.tar.gz</package> | |
| 42 <package>https://cran.r-project.org/src/contrib/Archive/RCurl/RCurl_1.95-4.5.tar.gz</package> | |
| 43 <package>https://cran.r-project.org/src/contrib/Archive/XML/XML_3.98-1.2.tar.gz</package> | |
| 44 <package>https://cran.r-project.org/src/contrib/lambda.r_1.1.9.tar.gz</package> | |
| 45 <package>https://cran.r-project.org/src/contrib/futile.options_1.0.0.tar.gz</package> | |
| 46 <package>https://cran.r-project.org/src/contrib/futile.logger_1.4.3.tar.gz</package> | |
| 47 <package>https://cran.r-project.org/src/contrib/snow_0.4-2.tar.gz</package> | |
| 48 <package>http://bioconductor.org/packages/release/bioc/src/contrib/BiocParallel_1.10.1.tar.gz</package> | |
| 49 <package>https://cran.r-project.org/src/contrib/lattice_0.20-35.tar.gz</package> | |
| 50 <package>https://cran.r-project.org/src/contrib/openssl_0.9.6.tar.gz</package> | |
| 51 <package>https://cran.r-project.org/src/contrib/base64_2.0.tar.gz</package> | |
| 52 <package>https://cran.r-project.org/src/contrib/quadprog_1.5-5.tar.gz</package> | |
| 53 <package>http://bioconductor.org/packages/release/bioc/src/contrib/multtest_2.32.0.tar.gz</package> | |
| 54 <package>http://bioconductor.org/packages/release/bioc/src/contrib/siggenes_1.50.0.tar.gz</package> | |
| 55 <package>https://cran.r-project.org/src/contrib/Matrix_1.2-10.tar.gz</package> | |
| 56 <package>https://cran.r-project.org/src/contrib/Archive/R6/R6_2.0.1.tar.gz</package> | |
| 57 <package>https://cran.r-project.org/src/contrib/nlme_3.1-131.tar.gz</package> | |
| 58 <package>https://cran.r-project.org/src/contrib/RColorBrewer_1.1-2.tar.gz</package> | |
| 59 <package>https://cran.r-project.org/src/contrib/nor1mix_1.2-2.tar.gz</package> | |
| 60 <package>https://cran.r-project.org/src/contrib/data.table_1.10.4.tar.gz</package> | |
| 61 <package>https://cran.r-project.org/src/contrib/mclust_5.2.3.tar.gz</package> | |
| 62 <package>https://cran.r-project.org/src/contrib/survival_2.41-3.tar.gz</package> | |
| 63 <package>https://cran.r-project.org/src/contrib/plyr_1.8.4.tar.gz</package> | |
| 64 <package>https://cran.r-project.org/src/contrib/codetools_0.2-15.tar.gz</package> | |
| 65 <package>http://bioconductor.org/packages/release/bioc/src/contrib/illuminaio_0.18.0.tar.gz</package> | |
| 66 <package>https://cran.r-project.org/src/contrib/jsonlite_1.4.tar.gz</package> | |
| 67 <package>https://cran.r-project.org/src/contrib/mime_0.5.tar.gz</package> | |
| 68 <package>https://cran.r-project.org/src/contrib/curl_2.6.tar.gz</package> | |
| 69 <package>https://cran.r-project.org/src/contrib/httr_1.2.1.tar.gz</package> | |
| 70 <package>ftp://164.41.45.6/pub/plan/R/src/contrib/beanplot_1.2.tar.gz</package> | |
| 71 <package>http://bioconductor.org/packages/release/bioc/src/contrib/preprocessCore_1.38.0.tar.gz</package> | |
| 72 <package>http://bioconductor.org/packages/release/bioc/src/contrib/GEOquery_2.42.0.tar.gz</package> | |
| 73 <package>https://cran.r-project.org/src/contrib/MASS_7.3-47.tar.gz</package> | |
| 74 <package>https://cran.r-project.org/src/contrib/reshape_0.8.6.tar.gz</package> | |
| 75 <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/S4Vectors_0.8.11.tar.gz</package> | |
| 76 <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/IRanges_2.4.8.tar.gz</package> | |
| 77 <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/GenomeInfoDb_1.6.3.tar.gz</package> | |
| 78 <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/AnnotationDbi_1.32.3.tar.gz</package> | |
| 79 <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/annotate_1.48.0.tar.gz</package> | |
| 80 <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/genefilter_1.52.1.tar.gz</package> | |
| 81 <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/zlibbioc_1.16.0.tar.gz</package> | |
| 82 <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/XVector_0.10.0.tar.gz</package> | |
| 83 <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/Biostrings_2.38.4.tar.gz</package> | |
| 84 <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/GenomicRanges_1.22.4.tar.gz</package> | |
| 85 <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/Rsamtools_1.22.0.tar.gz</package> | |
| 86 <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/SummarizedExperiment_1.0.2.tar.gz</package> | |
| 87 <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/GenomicAlignments_1.6.3.tar.gz</package> | |
| 88 <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/rtracklayer_1.30.4.tar.gz</package> | |
| 89 <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/biomaRt_2.26.1.tar.gz</package> | |
| 90 <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/GenomicFeatures_1.22.13.tar.gz</package> | |
| 91 <package>https://cran.r-project.org/src/contrib/lattice_0.20-35.tar.gz</package> | |
| 92 <package>https://cran.r-project.org/src/contrib/Archive/irlba/irlba_1.0.3.tar.gz</package> | |
| 93 <package>https://cran.r-project.org/src/contrib/Archive/htmltools/htmltools_0.2.6.tar.gz</package> | |
| 94 <package>https://cran.r-project.org/src/contrib/Archive/RJSONIO/RJSONIO_1.2-0.2.tar.gz</package> | |
| 95 <package>https://cran.r-project.org/src/contrib/Archive/yaml/yaml_2.1.12.tar.gz</package> | |
| 96 <package>https://cran.r-project.org/src/contrib/Archive/htmlwidgets/htmlwidgets_0.3.2.tar.gz</package> | |
| 97 <package>https://cran.rstudio.com/src/contrib/Archive/evaluate/evaluate_0.5.5.tar.gz</package> | |
| 98 <package>https://cran.r-project.org/src/contrib/Archive/formatR/formatR_1.0.tar.gz</package> | |
| 99 <package>https://cran.r-project.org/src/contrib/Archive/highr/highr_0.4.tar.gz</package> | |
| 100 <package>https://cran.r-project.org/src/contrib/Archive/markdown/markdown_0.6.5.tar.gz</package> | |
| 101 <package>https://cran.r-project.org/src/contrib/Archive/knitr/knitr_1.8.tar.gz</package> | |
| 102 <package>https://cran.r-project.org/src/contrib/Archive/httpuv/httpuv_1.2.2.tar.gz</package> | |
| 103 <package>https://cran.r-project.org/src/contrib/Archive/shiny/shiny_0.10.2.tar.gz</package> | |
| 104 <package>https://cran.rstudio.com/src/contrib/ellipse_0.3-8.tar.gz</package> | |
| 105 <package>https://cran.rstudio.com/src/contrib/corpcor_1.6.9.tar.gz</package> | |
| 106 <package>https://cran.rstudio.com/src/contrib/RColorBrewer_1.1-2.tar.gz</package> | |
| 107 <package>https://cran.rstudio.com/src/contrib/plyr_1.8.4.tar.gz</package> | |
| 108 <package>https://cran.r-project.org/src/contrib/assertthat_0.2.0.tar.gz</package> | |
| 109 <package>https://cran.r-project.org/src/contrib/lazyeval_0.2.0.tar.gz</package> | |
| 110 <package>https://cran.r-project.org/src/contrib/tibble_1.3.0.tar.gz</package> | |
| 111 <package>https://cran.rstudio.com/src/contrib/dplyr_0.5.0.tar.gz</package> | |
| 112 <package>https://cran.rstudio.com/src/contrib/tidyr_0.6.2.tar.gz</package> | |
| 113 <package>https://cran.rstudio.com/src/contrib/reshape2_1.4.2.tar.gz</package> | |
| 114 <package>https://cran.r-project.org/src/contrib/Archive/proto/proto_0.3-10.tar.gz</package> | |
| 115 <package>https://cran.r-project.org/src/contrib/dichromat_2.0-0.tar.gz</package> | |
| 116 <package>https://cran.r-project.org/src/contrib/labeling_0.3.tar.gz</package> | |
| 117 <package>https://cran.r-project.org/src/contrib/gtable_0.2.0.tar.gz</package> | |
| 118 <package>https://cran.r-project.org/src/contrib/Archive/doParallel/doParallel_1.0.8.tar.gz</package> | |
| 119 <package>https://cran.r-project.org/src/contrib/Archive/colorspace/colorspace_1.2-4.tar.gz</package> | |
| 120 <package>https://cran.r-project.org/src/contrib/Archive/munsell/munsell_0.4.tar.gz</package> | |
| 121 <package>https://cran.r-project.org/src/contrib/Archive/scales/scales_0.3.0.tar.gz</package> | |
| 122 <package>https://cran.r-project.org/src/contrib/gridBase_0.4-7.tar.gz</package> | |
| 123 <package>https://cran.r-project.org/src/contrib/Archive/ggplot2/ggplot2_2.0.0.tar.gz</package> | |
| 124 <package>https://cran.r-project.org/src/contrib/Archive/RGraphics/RGraphics_2.0-13.tar.gz</package> | |
| 125 <package>https://cran.r-project.org/src/contrib/Archive/NMF/NMF_0.20.5.tar.gz</package> | |
| 126 <package>https://cran.r-project.org/src/contrib/png_0.1-7.tar.gz</package> | |
| 127 <package>https://cran.rstudio.com/src/contrib/igraph_1.0.1.tar.gz</package> | |
| 128 <package>https://cran.r-project.org/src/contrib/whisker_0.3-2.tar.gz</package> | |
| 129 <package>https://www.bioconductor.org/packages/release/data/annotation/src/contrib/org.Hs.eg.db_3.4.1.tar.gz</package> | |
| 130 <package>https://bioconductor.org/packages/3.1/data/annotation/src/contrib/TxDb.Hsapiens.UCSC.hg19.knownGene_3.1.2.tar.gz</package> | |
| 131 <package>http://bioconductor.org/packages/release/data/annotation/src/contrib/FDb.InfiniumMethylation.hg19_2.2.0.tar.gz</package> | |
| 132 <package>https://cran.r-project.org/src/contrib/Archive/rstudioapi/rstudioapi_0.2.tar.gz</package> | |
| 133 <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/GenomicRanges_1.22.4.tar.gz</package> | |
| 134 <package>http://bioconductor.org/packages/3.2/bioc/src/contrib/bumphunter_1.10.0.tar.gz</package> | |
| 135 </action> | |
| 136 </actions> | |
| 137 </install> | |
| 138 <readme> | |
| 139 </readme> | |
| 140 </package> | |
| 141 </tool_dependency> |