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comparison GRsetFromGEO/GRsetFromGEO.xml @ 28:3d281ad15b83 draft

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author testtool
date Thu, 13 Apr 2017 11:26:43 -0400
parents 2d4a97506931
children 118e636a5f95
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27:2d4a97506931 28:3d281ad15b83
11 <command> Rscript $__tool_directory__/GRsetFromGEO.R "$GSE" "$output" </command> 11 <command> Rscript $__tool_directory__/GRsetFromGEO.R "$GSE" "$output" </command>
12 <inputs> 12 <inputs>
13 <param name="GSE" type="text" value="" label="Enter GSE ID." help="e.g. 'GSE51547'"/> 13 <param name="GSE" type="text" value="" label="Enter GSE ID." help="e.g. 'GSE51547'"/>
14 </inputs> 14 </inputs>
15 <outputs> 15 <outputs>
16 <data format="RData" name="output" label="GenomicRatioSet.RData"/> 16 <data format="txt" name="output" label="GenomicRatioSet.txt"/>
17 </outputs> 17 </outputs>
18 <tests> 18 <tests>
19 <test> 19 <test>
20 <param name="test"> 20 <param name="test">
21 <element name="test-data"> 21 <element name="test-data">
22 <collection type="data"> 22 <collection type="data">
23 <element name="GSE" value="GSE51547"/> 23 <element name="GSE" value="GSE51547"/>
24 </collection> 24 </collection>
25 </element> 25 </element>
26 </param> 26 </param>
27 <output format="RData" name="output" label="test-data/GenomicRatioSet.RData"/> 27 <output format="txt" name="output" label="test-data/GenomicRatioSet.txt"/>
28 </test> 28 </test>
29 </tests> 29 </tests>
30 <help> 30 <help>
31 Reading Illumina methylation array data from GEO. 31 Reading Illumina methylation array data from GEO.
32 </help> 32 </help>