Mercurial > repos > testtool > geo_data

comparison getGRsetFromGEO/getGRsetFromGEO.R @ 11:983651783ce9 draft

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author testtool
date Wed, 22 Mar 2017 09:01:06 -0400
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10:cbc8174bd361 11:983651783ce9
1 require("minfi", quietly = TRUE)
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3 options(warn = -1)
4 options("download.file.method"="wget")
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6 args <- commandArgs(trailingOnly = TRUE)
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8 GSE = args[1] #GSE51547
9 output = args[2] #output <- ("GEOdata.txt")
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11 GEO <- getGenomicRatioSetFromGEO(GSE)
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13 save(GEO, ascii=TRUE, file=output)
14