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comparison GRsetFromGEO/GRsetFromGEO.xml @ 26:c7bab1a516ce draft

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author testtool
date Thu, 13 Apr 2017 10:41:44 -0400
parents 104499c775e8
children 2d4a97506931
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25:104499c775e8 26:c7bab1a516ce
8 <command> Rscript $__tool_directory__/GRsetFromGEO.R "$GSE" "$output" </command> 8 <command> Rscript $__tool_directory__/GRsetFromGEO.R "$GSE" "$output" </command>
9 <inputs> 9 <inputs>
10 <param name="GSE" type="text" value="" label="Enter GSE ID." help="e.g. 'GSE51547'"/> 10 <param name="GSE" type="text" value="" label="Enter GSE ID." help="e.g. 'GSE51547'"/>
11 </inputs> 11 </inputs>
12 <outputs> 12 <outputs>
13 <data format="Rdata" name="output" label="GenomicRatioSet.Rdata"/> 13 <data format="RData" name="output" label="GenomicRatioSet.Rdata"/>
14 </outputs> 14 </outputs>
15 <tests> 15 <tests>
16 <test> 16 <test>
17 <param name="test"> 17 <param name="test">
18 <element name="test-data"> 18 <element name="test-data">
19 <collection type="data"> 19 <collection type="data">
20 <element name="GSE" value="GSE51547"/> 20 <element name="GSE" value="GSE51547"/>
21 </collection> 21 </collection>
22 </element> 22 </element>
23 </param> 23 </param>
24 <output format="Rdata" name="output" label="test-data/GenomicRatioSet.Rdata"/> 24 <output format="RData" name="output" label="test-data/GenomicRatioSet.Rdata"/>
25 </test> 25 </test>
26 </tests> 26 </tests>
27 <help> 27 <help>
28 Reading Illumina methylation array data from GEO. 28 Reading Illumina methylation array data from GEO.
29 </help> 29 </help>