comparison getGEO/getGEO.xml @ 10:cbc8174bd361 draft

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10:cbc8174bd361

<tool id="GEO" name="getGEO" version="1.16.2">
  <requirements>
         <requirement type="package" version="3.2.1">R</requirement>
     </requirements>
<stdio>
    <exit_code range="1:" />
 </stdio>
  <command> Rscript $__tool_directory__/getGEO.R "$GSMTable" "$protocol" "$platform" "$Data_Table"</command>
  <inputs>
    <param optional="false" format="csv" name="GSMTable" type="data" value="" help="GEO table of data." label="[required] GSMTable">
      <validator type="empty_field" message="This field is required."/>
    </param>
  </inputs>
  <outputs>
    <data format="txt" name="protocol" label="protocol.txt"/>
    <data format="txt" name="platform" label="platform.txt"/>
    <data format="txt" name="Data_Table" label="Data_Table.txt"/>
  </outputs>
  <tests>
    <test>
      <param name="test">
      <element name="test-data">
          <collection type="data">
              <element name="GSMTable" value="test-data/input.csv" />
          </collection>
        </element>
        </param>
        <output format="txt" name="protocol" label="test-data/protocol.txt"/>
        <output format="txt" name="platform" label="test-data/platform.txt"/>
        <output format="txt" name="Data_Table" label="test-data/Data_Table.txt"/>
        </test>
    </tests>
  <help>
**Description**
</help>
<citations>
GEO
</citations>
</tool>