Mercurial > repos > testtool > geo_data

diff GRsetFromGEO/GRsetFromGEO.R @ 12:0631845b906d draft

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author testtool
date Wed, 12 Apr 2017 08:29:45 -0400
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children 9c9e389abef6
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/GRsetFromGEO/GRsetFromGEO.R	Wed Apr 12 08:29:45 2017 -0400
@@ -0,0 +1,14 @@
+require("minfi", quietly = TRUE)
+
+options(warn = -1)
+options("download.file.method"="wget")
+
+args <- commandArgs(trailingOnly = TRUE)
+GSE = args[1] 
+output = args[2] 
+
+GRset <- getGenomicRatioSetFromGEO(GSE)
+
+save(GRset,file = output)
+
+