diff GRsetFromGEO/GRsetFromGEO.xml @ 34:59a5237b72a3 draft

Uploaded

--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/GRsetFromGEO/GRsetFromGEO.xml	Fri Apr 14 09:25:08 2017 -0400
@@ -0,0 +1,38 @@
+<tool id="GRset" name="GRsetFromGEO" version="1.16.2">
+  <description>
+Reading Illumina methylation array data from GEO
+  </description>
+  <requirements>
+         <requirement type="package" version="3.2.1">R</requirement>
+     </requirements>
+<stdio>
+   <exit_code range="1:" />
+</stdio>
+  <command> Rscript $__tool_directory__/GRsetFromGEO.R "$GSE" "$output" </command>
+  <inputs>
+    <param optional="false" format="txt" name="GSE" type="text" value="" label="Enter GSE ID." help="e.g. 'GSE51547'">
+      <validator type="empty_field" message="This field is required."/>
+    </param>
+  </inputs>
+  <outputs>
+    <data format="rdata" name="output" label="GRsetFromGEO.rdata"/>
+  </outputs>
+  <tests>
+    <test>
+      <param name="test">
+      <element name="test-data">
+          <collection type="data">
+              <element name="GSE" value="GSE51547"/>
+          </collection>
+        </element>
+        </param>
+        <output format="rdata" name="output" label="test-data/GRsetFromGEO.rdata"/>
+        </test>
+    </tests>
+  <help>
+**Reading Illumina methylation array data from GEO**
+</help>
+<citations>
+DMR
+</citations>
+</tool>