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diff getGEO/getGEO.xml @ 65:ad054b925eda draft

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author testtool
date Thu, 11 May 2017 06:31:45 -0400
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--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/getGEO/getGEO.xml	Thu May 11 06:31:45 2017 -0400
@@ -0,0 +1,40 @@
+<tool id="GEO" name="getGEO" version="1.16.2">
+  <requirements>
+        <requirement type= "package" version="0.0.1">450kdependency</requirement>
+         <requirement type="package" version="3.2.1">R</requirement>
+     </requirements>
+<stdio>
+    <exit_code range="1:" />
+ </stdio>
+  <command> Rscript $__tool_directory__/getGEO.R "$GSMTable" "$protocol" "$platform" "$Data_Table"</command>
+  <inputs>
+    <param optional="false" format="txt" name="GSMTable" type="data" value="" help="GEO table of data." label="[required] GSMTable">
+      <validator type="empty_field" message="This field is required."/>
+    </param>
+  </inputs>
+  <outputs>
+    <data format="txt" name="protocol" label="protocol.txt"/>
+    <data format="txt" name="platform" label="platform.txt"/>
+    <data format="txt" name="Data_Table" label="Data_Table.txt"/>
+  </outputs>
+  <tests>
+    <test>
+      <param name="test">
+      <element name="test-data">
+          <collection type="data">
+              <element name="GSMTable" value="test-data/input.txt" />
+          </collection>
+        </element>
+        </param>
+        <output format="txt" name="protocol" label="test-data/protocol.txt"/>
+        <output format="txt" name="platform" label="test-data/platform.txt"/>
+        <output format="txt" name="Data_Table" label="test-data/Data_Table.txt"/>
+        </test>
+    </tests>
+  <help>
+**Description**
+</help>
+<citations>
+GEO
+</citations>
+</tool>