view GRsetFromGEO/GRsetFromGEO.xml @ 61:599b80e9eb5b draft

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<?xml version="1.0" encoding="UTF-8"?>
<tool id="GetGEO" name="GRsetFromGEO" version="1.16.2">
  <description>
    Reading Illumina methylation array data from GEO
  </description>
  <macros>
      <import>GRsetFromGEO_macros.xml</import>
  </macros>
      <expand macro="requirements" />
<stdio>
   <exit_code range="1:" />
</stdio>
  <command> Rscript $__tool_directory__/GRsetFromGEO.R "$GSE" "$output" </command>
  <inputs>
     <param name="GSE" type="text" value="" label="Enter GSE ID." help="e.g. 'GSE51547'"/>
  </inputs>
  <outputs>
    <data format="RDdata" name="output" label="GRsetFromGEO.RData"/>
  </outputs>
  <tests>
    <test>
      <param name="test">
      <element name="test-data">
          <collection type="data">
                <element name="GSE" value="GSE51547"/>
          </collection>
        </element>
        </param>
        <output type="data" format="RData"  name="output" label="test-data/out.RData"/>
        </test>
    </tests>
  <help>
**Description**
</help>
<citations>
GEO
</citations>
</tool>