Mercurial > repos > testtool > geo_data

view GRsetFromGEO/.Rhistory @ 70:759073309c9c draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author testtool
date Fri, 09 Jun 2017 11:48:24 -0400
parents
children
line wrap: on
line source

require("minfi", quietly = TRUE)
?require
require("minfi", quietly = TRUE)
minfi
as.data.frame(GRset)
GRset <- getGenomicRatioSetFromGEO(GSE)
getGenomicRatioSetFromGEO
require("minfi", quietly = TRUE)
options(warn = -1)
options("download.file.method"="wget")
args <- commandArgs(trailingOnly = TRUE)
GSE = args[1]
output = args[2]
GRset <- getGenomicRatioSetFromGEO(GSE)
save(GRset,file = output)
sessionInfo()