view getGRsetFromGEO/getGRsetFromGEO.xml @ 11:983651783ce9 draft

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<tool id="getGRsetFromGEO" name="getGRsetFromGEO" version="1.16.2">
  <description>
    from GEO
  </description>
  <requirements>
         <requirement type="package" version="3.2.1">R</requirement>
     </requirements>
<stdio>
   <exit_code range="1:" />
</stdio>
<command> Rscript $__tool_directory__/getGRsetFromGEO.R "$GSE" "$output"</command>
<inputs>
     <param type="text" name="GSE" value="" label="The GSE ID from GEO" help="e.g. 'GSE51547'"/>
</inputs>
  <outputs>
      <data format="rdata" name="output" label="GenomicRatioSetFromGEO"/>
  </outputs>
  <tests>
    <test>
      <param name="test">
      <element name="test-data">
          <collection type="data">
                <element name="GSE" value="GSE51547"/>
          </collection>
        </element>
        </param>
        <output format="rdata"  name="output" label="test-data/GEOdata.RData"/>
        </test>
      </tests>
  <help>
**Description**
</help>
<citations>
GEO
</citations>
</tool>