Mercurial > repos > testtool > geo_data
view GRsetFromGEO/GRsetFromGEO.xml @ 58:ab67fa20bd13 draft
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author | testtool |
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date | Fri, 28 Apr 2017 07:47:43 -0400 |
parents | d4c5ec2d87d5 |
children | 210823033b07 |
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<tool id="GetGEO" name="GRsetFromGEO" version="1.16.2"> <description> Reading Illumina methylation array data from GEO </description> <requirements> <requirement type="package" version="0.0.1">450kdependency</requirement> </requirements> <stdio> <exit_code range="1:" /> </stdio> <command> Rscript $__tool_directory__/GRsetFromGEO.R "$GSE" "$output" </command> <inputs> <param name="GSE" type="text" value="" label="Enter GSE ID." help="e.g. 'GSE51547'"/> </inputs> <outputs> <data format="RDdata" name="output" label="GRsetFromGEO.RData"/> </outputs> <tests> <test> <param name="test"> <element name="test-data"> <collection type="data"> <element name="GSE" value="GSE51547"/> </collection> </element> </param> <output type="data" format="RData" name="output" label="test-data/out.RData"/> </test> </tests> <help> **Description** </help> <citations> GEO </citations> </tool>