R
Rscript $__tool_directory__/GRsetFromGEO.R "$GSE" "$output"
Reading Illumina methylation array data from GEO.
Aryee, Martin J., et al. "Minfi: a flexible and comprehensive Bioconductor package for the analysis of Infinium DNA methylation microarrays." Bioinformatics 30.10 (2014): 1363-1369.