Mercurial > repos > testtool > geo_data

changeset 28:3d281ad15b83 draft

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Uploaded
author testtool
date Thu, 13 Apr 2017 11:26:43 -0400
parents 2d4a97506931
children 118e636a5f95
files GRsetFromGEO/GRsetFromGEO.R GRsetFromGEO/GRsetFromGEO.xml
diffstat 2 files changed, 5 insertions(+), 3 deletions(-) [+]
line wrap: on
line diff
--- a/GRsetFromGEO/GRsetFromGEO.R	Thu Apr 13 11:01:46 2017 -0400
+++ b/GRsetFromGEO/GRsetFromGEO.R	Thu Apr 13 11:26:43 2017 -0400
@@ -8,5 +8,7 @@
 output = args[2] 
 
 GRset <- getGenomicRatioSetFromGEO(GSE)
+a<-"stefan"
+write.table(a,output)
 
-save(GRset,file = output)
+#save(GRset,file = output)
--- a/GRsetFromGEO/GRsetFromGEO.xml	Thu Apr 13 11:01:46 2017 -0400
+++ b/GRsetFromGEO/GRsetFromGEO.xml	Thu Apr 13 11:26:43 2017 -0400
@@ -13,7 +13,7 @@
      <param name="GSE" type="text" value="" label="Enter GSE ID." help="e.g. 'GSE51547'"/>
   </inputs>
   <outputs>
-   <data format="RData" name="output" label="GenomicRatioSet.RData"/>
+   <data format="txt" name="output" label="GenomicRatioSet.txt"/>
   </outputs>
   <tests>
     <test>
@@ -24,7 +24,7 @@
           </collection>
         </element>
         </param>
-        <output format="RData" name="output" label="test-data/GenomicRatioSet.RData"/>
+        <output format="txt" name="output" label="test-data/GenomicRatioSet.txt"/>
         </test>
     </tests>
   <help>