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changeset 32:be1ca0e7829b draft

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Uploaded
author testtool
date Thu, 13 Apr 2017 12:50:58 -0400
parents cc4b808cb2ea
children 2c799524e1d3
files GRsetFromGEO/GRsetFromGEO.R GRsetFromGEO/GRsetFromGEO.xml
diffstat 2 files changed, 8 insertions(+), 5 deletions(-) [+]
line wrap: on
line diff
--- a/GRsetFromGEO/GRsetFromGEO.R	Thu Apr 13 12:19:33 2017 -0400
+++ b/GRsetFromGEO/GRsetFromGEO.R	Thu Apr 13 12:50:58 2017 -0400
@@ -6,4 +6,7 @@
 
 GRset <- getGenomicRatioSetFromGEO(GSE)
 
-save(GRset,output)
+#save(GRset,output)
+a<-"franek"
+
+write.table(a, output, row.names = FALSE,quote=FALSE,sep="\t")
\ No newline at end of file
--- a/GRsetFromGEO/GRsetFromGEO.xml	Thu Apr 13 12:19:33 2017 -0400
+++ b/GRsetFromGEO/GRsetFromGEO.xml	Thu Apr 13 12:50:58 2017 -0400
@@ -1,7 +1,7 @@
 <tool id="GRset" name="GRsetFromGEO" version="1.16.2">
   <requirements>
-   <requirement name="package_r_3_2_1" type="package" version="3.2.1">R</requirement>
-</requirements>
+         <requirement type="package" version="3.2.1">R</requirement>
+     </requirements>
 <stdio>
    <exit_code range="1:" />
 </stdio>
@@ -10,7 +10,7 @@
     <param name="GSE" type="text" value="" label="Enter GSE ID." help="e.g. 'GSE51547'"/>
   </inputs>
   <outputs>
-    <data type="galaxy.datatypes.binary:RData" name="output" label="GenomicRatioSet.RData"/>
+     <data format="txt" name="output" label="GSMTable.txt"/>
   </outputs>
   <tests>
     <test>
@@ -21,7 +21,7 @@
           </collection>
         </element>
         </param>
-        <output  type="galaxy.datatypes.binary:RData" name="output" label="test-data/GenomicRatioSet.RData"/>
+        <output format="txt"  name="output" label="test-data/GSMTable.txt"/>
         </test>
     </tests>
   <help>