Mercurial > repos > testtool > geo_data

changeset 68:fc93085430a8 draft

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Uploaded
author testtool
date Thu, 11 May 2017 11:16:23 -0400
parents 5e67fa9f807b
children 23e9c26c3334
files getGEO/getGEO.R getGEO/test-data/._input.csv getGEO/test-data/._input.txt getGEO/test-data/input.csv getGEO/test-data/input.txt
diffstat 5 files changed, 4 insertions(+), 10 deletions(-) [+]
line wrap: on
line diff
--- a/getGEO/getGEO.R	Thu May 11 10:03:02 2017 -0400
+++ b/getGEO/getGEO.R	Thu May 11 11:16:23 2017 -0400
@@ -1,9 +1,3 @@
-require("BiocGenerics", quietly = TRUE)
-require("data.table", quietly = TRUE)
-require("GEOquery", quietly = TRUE)
-require("rtracklayer", quietly = TRUE)
-require("FDb.InfiniumMethylation.hg19", quietly = TRUE)
-
 options("download.file.method.GEOquery"="wget")
 options(warn = -1)
 
Binary file getGEO/test-data/._input.csv has changed
Binary file getGEO/test-data/._input.txt has changed
--- a/getGEO/test-data/input.csv	Thu May 11 10:03:02 2017 -0400
+++ /dev/null	Thu Jan 01 00:00:00 1970 +0000
@@ -1,4 +0,0 @@
-ID,Phenotype
-GSM1247787,melanoma
-GSM1247784,melanoma
-GSM1247733,healthy
--- /dev/null	Thu Jan 01 00:00:00 1970 +0000
+++ b/getGEO/test-data/input.txt	Thu May 11 11:16:23 2017 -0400
@@ -0,0 +1,4 @@
+ID,Phenotype
+GSM1247787,melanoma
+GSM1247784,melanoma
+GSM1247733,healthy