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comparison GEO/getGEO.R @ 24:487566ba7b28 draft

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author testtool
date Mon, 06 Feb 2017 09:33:48 -0500
parents 70ad38b81a10
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23:70ad38b81a10 24:487566ba7b28
3 require("GEOquery", quietly = TRUE) 3 require("GEOquery", quietly = TRUE)
4 require("rtracklayer", quietly = TRUE) 4 require("rtracklayer", quietly = TRUE)
5 require("FDb.InfiniumMethylation.hg19", quietly = TRUE) 5 require("FDb.InfiniumMethylation.hg19", quietly = TRUE)
6 6
7 options(warn = -1) 7 options(warn = -1)
8 options(download.file.method ="wget")
9 args <- commandArgs(trailingOnly = TRUE) 8 args <- commandArgs(trailingOnly = TRUE)
10 GSMTable = args[1] 9 GSMTable = args[1]
11 MetaTable = args[2] 10 MetaTable = args[2]
12 IlmnTable = args[3] 11 IlmnTable = args[3]
13 gmTable = args[4] 12 gmTable = args[4]