Mercurial > repos > testtool > get_geo
diff getGEO/.Rhistory @ 11:2418fe6a0d12 draft
Uploaded
| author | testtool |
|---|---|
| date | Wed, 18 Jan 2017 11:35:14 -0500 |
| parents | |
| children |
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--- /dev/null Thu Jan 01 00:00:00 1970 +0000 +++ b/getGEO/.Rhistory Wed Jan 18 11:35:14 2017 -0500 @@ -0,0 +1,17 @@ +first<-getGEO(TAB$ID[1],getGPL=FALSE) +require("BiocGenerics",quietly = TRUE) +require("data.table",quietly = TRUE) +require("minfi",quietly = TRUE) +require("ChIPseeker",quietly = TRUE) +require("ChIPpeakAnno",quietly = TRUE) +require("TxDb.Hsapiens.UCSC.hg19.knownGene",quietly = TRUE) +require("FDb.InfiniumMethylation.hg19",quietly = TRUE) +require("GEOquery",quietly = TRUE) +require("rtracklayer",quietly = TRUE) +install.packages("formatR") +library(formatR) +getwd() +tidy_eval("/Users/katarzynamurat/Desktop/galaxy/tools/getGEO") +tidy_eval("/Users/katarzynamurat/Desktop/galaxy/tools/getGEO") +source('~/Desktop/galaxy/tools/findDMR/findDMR.R') +source('~/Desktop/galaxy/tools/findDMR/findDMR.R')