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author testtool
date Fri, 20 Jan 2017 11:29:05 -0500
parents 2418fe6a0d12
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first<-getGEO(TAB$ID[1],getGPL=FALSE)
require("BiocGenerics",quietly = TRUE)
require("data.table",quietly = TRUE)
require("minfi",quietly = TRUE)
require("ChIPseeker",quietly = TRUE)
require("ChIPpeakAnno",quietly = TRUE)
require("TxDb.Hsapiens.UCSC.hg19.knownGene",quietly = TRUE)
require("FDb.InfiniumMethylation.hg19",quietly = TRUE)
require("GEOquery",quietly = TRUE)
require("rtracklayer",quietly = TRUE)
install.packages("formatR")
library(formatR)
getwd()
tidy_eval("/Users/katarzynamurat/Desktop/galaxy/tools/getGEO")
tidy_eval("/Users/katarzynamurat/Desktop/galaxy/tools/getGEO")
source('~/Desktop/galaxy/tools/findDMR/findDMR.R')
source('~/Desktop/galaxy/tools/findDMR/findDMR.R')