# HG changeset patch # User testtool # Date 1486645986 18000 # Node ID 4bb463a265429fddabaa99af9ccbe0112269dd16 # Parent eb1a8cedf6c5ea6cfdd6ca2a3481cf252ae0bbcf Deleted selected files diff -r eb1a8cedf6c5 -r 4bb463a26542 GEO/getGEO.xml --- a/GEO/getGEO.xml Wed Feb 08 09:13:39 2017 -0500 +++ /dev/null Thu Jan 01 00:00:00 1970 +0000 @@ -1,40 +0,0 @@ -<tool id="GEO" name="getGEO" version="1.16.2"> - <?xml version='1.0' encoding='utf-8'?> - <requirements> - <requirement type="package" version="3.2.1">R</requirement> - </requirements> -<stdio> - <exit_code range="1:" /> -</stdio> - <command> Rscript $__tool_directory__/getGEO.R "$GSMTable" "$MetaTable" "$IlmnTable" "$gmTable"</command> - <inputs> - <param optional="false" format="csv" name="GSMTable" type="data" value="" help="GEO table of data." label="[required] GSMTable"> - <validator type="empty_field" message="This field is required."/> - </param> - </inputs> - <outputs> - <data format="csv" name="MetaTable" label="MetaData.csv"/> - <data format="csv" name="IlmnTable" label="IlmnData.csv"/> - <data format="csv" name="gmTable" label="gmSet.csv"/> - </outputs> - <tests> - <test> - <param name="test"> - <element name="test-data"> - <collection type="data"> - <element name="GSMTable" value="test-data/input.csv" /> - </collection> - </element> - </param> - <output format="csv" name="MetaTable" label="test-data/MetaTable.csv"/> - <output format="csv" name="IlmnTable" label="test-data/IlmnTable.csv"/> - <output format="csv" name="gmTable" label="test-data/gmTable.csv"/> - </test> - </tests> - <help> -**Description** -</help> -<citations> -GEO -</citations> -</tool>