Mercurial > repos > testtool > get_gr_set

annotate GRsetFromGEO/GRsetFromGEO.R @ 21:07f0fc6e4d1d draft

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author testtool
date Mon, 03 Jul 2017 07:14:02 -0400
parents 3431c6054674
children 71a8c9b37d45
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1 require("minfi", quietly = TRUE)
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3 options(warn = -1)
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4 options('download.file.method.GEOquery' = 'libcurl')
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5 options('GEOquery.inmemory.gpl'=FALSE)
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8 args <- commandArgs(trailingOnly = TRUE)
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9 input = args[1]
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10 output = args[2]
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12 GRset <- getGenomicRatioSetFromGEO(input)
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14 save(GRset,file = output)