|
27
|
1 <tool id="getGRset" name="GRsetFromGEO">
|
|
|
2 <description>downloads data from GEO</description>
|
|
|
3 <command>Rscript $__tool_directory__/GRsetFromGEO.R $input output.RData</command>
|
|
20
|
4 <inputs>
|
|
27
|
5 <param format="text" name="input" type="text" value="" label="Enter GSE ID." help="e.g. 'GSE51547'"/>
|
|
20
|
6 </inputs>
|
|
|
7 <outputs>
|
|
27
|
8 <data format="RDdata" name="output" label="output.RData" />
|
|
20
|
9 </outputs>
|
|
|
10 <help>
|
|
27
|
11 **What it does**
|
|
|
12 This R-based tool downloads data from GEO using getGEO from the GEOquery package and then returns a GenomicRatioSet object
|
|
|
13 **Input**
|
|
|
14 The GSE ID of the dataset to be downloaded from GEO "e.g. 'GSE51547'"
|
|
|
15 **Output**
|
|
|
16 GenomicRatioSet object
|
|
20
|
17 </help>
|
|
5
|
18 </tool>
|
