Mercurial > repos > testtool > get_gr_set

view GRsetFromGEO/GRsetFromGEO.R @ 61:2382697aad09 draft

Find changesets by keywords (author, files, the commit message), revision number or hash, or revset expression.
Uploaded
author testtool
date Thu, 11 Jan 2018 12:48:29 -0500
parents d7cf4a35f827
children
line wrap: on
line source

require(minfi, quietly = TRUE)
require(IlluminaHumanMethylation450kanno.ilmn12.hg19, quietly = TRUE)

options('GEOquery.inmemory.gpl'=TRUE)
options('download.file.method.GEOquery' = 'libcurl')

options(warn = -1)

args <- commandArgs(trailingOnly = TRUE)
input = args[1] 
output = args[2] 

GRset <- getGenomicRatioSetFromGEO(input)

save(GRset, file = output)